Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g02001 ATGATGGATGGTGATGATGAGTATATTCAAGCATCTAAAGGGAAGAATGTTGAAAGTTTCACATGTTCAGAAGTAGCACTACCACAGAACAAAAATGCTAAGAAGAAAAAGAGTAAGATAGAGAACAAGAGAAGATTCAGTGATGAGCAAATTAGATCACTTGAGTGCATATTTGAGTCAGAGTCCAAGCTTGAGCCAAGGAAGAAGATTCAGCTAGCAAGAGATCTTGGATTGCAGCCAAGGCAAGTTGCTATATGGTTTCAGAACAGAAGGGCAAGGTGGAAATCAAAACGAATAGAGCAGGAATATAGGAAGCTTAAAGATGAATATGACTGCTTAGCTTCTCGCTTTGAGTCTCTAAAGAAAGAGAAGGACTCTTTACAATTAGAGCTAAAGAAGCTGAATGATTTGATGGTGGTATCAGCATCTCATCATGATGGAAGAAGACAAGAGAAGGTTATTGCAAAGGGAAGTAGAACAGATGATGGTGGTTCAGGAAGTCCTCACAGCAATTGGAGGCCTAACGAAGAAGAAGAAGAAGCAAAGACAAGTTTTTCAAATGACACAGTACCTTTACCTTCTGATGATAAACCTGATGAGGAAAGAGATCACCACCGCCATCACCACCACCAAGATATGAGAATGGATGATGAGGAGCAGCATTTAGAGATTCCTTTGGAATCACTTGAGAAATGGTACAGTGAGGATCCAAGTGGAATCTTGGATCAATCATGTAGCACTTCACAATGGTTGGATTTCTGGACTTGA 768 0.401 MMDGDDEYIQASKGKNVESFTCSEVALPQNKNAKKKKSKIENKRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDCLASRFESLKKEKDSLQLELKKLNDLMVVSASHHDGRRQEKVIAKGSRTDDGGSGSPHSNWRPNEEEEEAKTSFSNDTVPLPSDDKPDEERDHHRHHHHQDMRMDDEEQHLEIPLESLEKWYSEDPSGILDQSCSTSQWLDFWT 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g02001 255 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 255 - -
Aip10g02001 255 MobiDBLite consensus disorder prediction 193 219 - -
Aip10g02001 255 SUPERFAMILY Homeodomain-like 33 97 IPR009057 -
Aip10g02001 255 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 255 IPR045224 GO:0003700
Aip10g02001 255 CDD homeodomain 43 98 IPR001356 GO:0003677
Aip10g02001 255 Gene3D - 23 102 - -
Aip10g02001 255 MobiDBLite consensus disorder prediction 142 219 - -
Aip10g02001 255 ProSiteProfiles 'Homeobox' domain profile. 37 97 IPR001356 GO:0003677
Aip10g02001 255 Coils Coil 89 137 - -
Aip10g02001 255 SMART HOX_1 40 101 IPR001356 GO:0003677
Aip10g02001 255 MobiDBLite consensus disorder prediction 142 158 - -
Aip10g02001 255 Pfam Homeobox associated leucine zipper 97 138 IPR003106 GO:0006355|GO:0043565
Aip10g02001 255 ProSitePatterns 'Homeobox' domain signature. 72 95 IPR017970 GO:0000981|GO:0006355
Aip10g02001 255 PRINTS Lambda-repressor HTH signature 68 77 IPR000047 GO:0003677
Aip10g02001 255 PRINTS Lambda-repressor HTH signature 77 93 IPR000047 GO:0003677
Aip10g02001 255 Coils Coil 30 50 - -
Aip10g02001 255 Pfam Homeodomain 43 95 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g02001 Aip-Chr10 84876192 84877842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g02001 31 255 Homeobox Transcription Factor Family AT2G46680 40.000 7.16e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip10g02001 Homeodomain 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g02001 K09338 - gmx:100793260 300.056