Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01996 ATGCGACGCAAGAGAGGAGGCTGTTCCGCCGTGCACTGTCGTCGCTCCTGGGGTCGATTGAAGCCGCCGCCGCAGCTAGGGCTTGCTGTGCTCCTGCAACAATATATTTTAGAAGTTGTATTGGACTGGAAGAGAGGGAAGGGGAGCGATTGTGAATACAGAAGTTTGGACCTCTTCATATATGGGAACAATGCTGATCGATTCCTGAATTGGAGCACTAGGTTCCAAATTGTTCTAGGCGTGGCAAGGGGATTGCAGTACCTTCATGAGGATTCACATCTAAGAATTGTTCACCGAGACATCAAGGCAAGCAACATTCTTCTTGATCATAAGTTTCATCCCAAGATTGGAGACTTTGGCCTTGCCAGGTTCTTCCCTGAAGACCAAGCTTATCTTAGCACACAATTCGCTGGAACATTCGCCAAAAGGGCTGTTTTCGCCGGAGCCAGAACATTATCGAGGACCAAAGCTGAAAGTTGCCATCCTTGGAGCTGGGCTTTCTGGCATGTCAACTACACTGGAACTCTTGGATCAAGGACACGAGTCCCAGAAGAATACACAGGTGTTGCAAAAGCTGATTTTCTGATAAAGGTTGAAGACTTCTTTAGGTACTTTTTCTCAGATGATGCTGTAAACTTCCATGAGTCTTTCCATAAAAGATGTGGTGATAAAGACTTCAAGTGTAGTTTATGGCGTCCTCAAGAGAAATTTGGGTATGCTCGTGAACTATCTTTCAACATCCAATAA 747 0.4565 MRRKRGGCSAVHCRRSWGRLKPPPQLGLAVLLQQYILEVVLDWKRGKGSDCEYRSLDLFIYGNNADRFLNWSTRFQIVLGVARGLQYLHEDSHLRIVHRDIKASNILLDHKFHPKIGDFGLARFFPEDQAYLSTQFAGTFAKRAVFAGARTLSRTKAESCHPWSWAFWHVNYTGTLGSRTRVPEEYTGVAKADFLIKVEDFFRYFFSDDAVNFHESFHKRCGDKDFKCSLWRPQEKFGYARELSFNIQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01996 248 ProSitePatterns Serine/Threonine protein kinases active-site signature. 96 108 IPR008271 GO:0004672|GO:0006468
Aip10g01996 248 Gene3D Transferase(Phosphotransferase) domain 1 53 158 - -
Aip10g01996 248 SUPERFAMILY Protein kinase-like (PK-like) 51 140 IPR011009 -
Aip10g01996 248 Pfam Protein kinase domain 75 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g01996 248 ProSiteProfiles VASt domain profile. 185 248 IPR031968 -
Aip10g01996 248 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 53 140 - -
Aip10g01996 248 ProSiteProfiles Protein kinase domain profile. 1 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g01996 248 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 53 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01996 Aip-Chr10 82866858 82869246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01996 69 140 Receptor kinase-like Gene Family AT1G70530 63.889 1.68e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip10g01996 Pkinase 2.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01996 - - aip:107647562 369.007