Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01974 ATGCAATCAGATAATGGCAAGTTATTCATTGGGGGGATATCATGGGACACGAATGAAGAGCGACTCAGAGAGTATTTCGGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGCACCACCTGTCGAGCCCGTGGATTTGGTTTTGTTGTTTTTTCGGACCCAGCTGTGGCAGACTTAGTCATAAAAGAGAAGCACAATATAGATGGAAGGATGGTGGAGGCAAAGAAGGCTGTTCCCAGGGATGATCAGAATATACTGAGTAGAAACAGTGGCAGCGTCCATGGTTCTCCCGGTCCAGGTCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCTACGGTGACAGAGAGCGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACGGATGTTGTAGTAATGTATGATCACAACACTCAAAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAGGAGGCTGTTGACAAGGTTTTGTTTAAGAATTTCCATGAATTGAATGGTAAAATGGTTGAAGTGAAGCGAGCAGTACCTAAGGAGTTATCGCCAGGACCGAATCGCAGCCCACTTCCTGGATTCAACTATGGTTTGAGTAGGGTCAATAACTTCTTAAATGGATTCACTCAGGGATATACTCCAAGTGCTGTTGGAGGCTATGGACTTCAGGTGGACGGTAGATTCAGTCCAGTTGCGAGTGCTCGAACTGGATTTGCTCCATTTGGATCTGGTTATGGAATGAGCATGAATTTTGAACCTAATTTGGGTGCTGGATTTGGGAGGAGTGCAAATTTCAATAGTAATCTTAGCTATGGTCGGGGTTTAAATCCTCCTTACATTGGCAGCTCCAATAGGCTTGGAAGCCCTATGGGGTATGACAGTGGTAATGGAGGAAGCAATTCTTTTTTCAGCTCCGCTACACGGAATTTGTGGGGGAATGGTGGCCTTAGTTATGGAACTGGTTCTGCAAATTCCAGTGCATACGTTGGATCCGGGAGTGGAAGCGTTGGAGGAAACGCCTTTGGCAATGCTGGTGTCAACTGGGGTACTTCAGCGGTTTCTGCGCAAGGCGGTGGTAACAATGTGCTACAGAATAGTGGCAACCTTGGTTATGGAGGTGGTGACAACACTTATAATTTGGGGACTGGTGGGTATGGAAGAAGCAGTGGTTCTGCTATTGCCCCAACATCTTCATACACTGCTTCAAATGGCGCCGTTGATGGTGCTTTTGCTGATTTTTACAATAATAATAATTCGGTTTATGGGGACGCCACATGGCGTTCTTCAAATTCCGAGCGAGATGGATCTGGTCCCTTCAGTTATGGACTTGGTGGTTCGGCTACAGATGTTTCAGGAAAAAGTTCTCCGGGTTATGTTGGTGGTTATACTATTAATAAGAGGCAGCCAAATAGGGGAATTGCTACATAG 1440 0.4528 MQSDNGKLFIGGISWDTNEERLREYFGTYGEVVEAVIMKDRTTCRARGFGFVVFSDPAVADLVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSVHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLFKNFHELNGKMVEVKRAVPKELSPGPNRSPLPGFNYGLSRVNNFLNGFTQGYTPSAVGGYGLQVDGRFSPVASARTGFAPFGSGYGMSMNFEPNLGAGFGRSANFNSNLSYGRGLNPPYIGSSNRLGSPMGYDSGNGGSNSFFSSATRNLWGNGGLSYGTGSANSSAYVGSGSGSVGGNAFGNAGVNWGTSAVSAQGGGNNVLQNSGNLGYGGGDNTYNLGTGGYGRSSGSAIAPTSSYTASNGAVDGAFADFYNNNNSVYGDATWRSSNSERDGSGPFSYGLGGSATDVSGKSSPGYVGGYTINKRQPNRGIAT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01974 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Aip10g01974 479 Gene3D - 103 189 IPR012677 -
Aip10g01974 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Aip10g01974 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Aip10g01974 479 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Aip10g01974 479 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Aip10g01974 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 174 IPR000504 GO:0003723
Aip10g01974 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Aip10g01974 479 MobiDBLite consensus disorder prediction 456 479 - -
Aip10g01974 479 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Aip10g01974 479 Gene3D - 4 88 IPR012677 -
Aip10g01974 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Aip10g01974 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 479 - -
Aip10g01974 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 479 - -
Aip10g01974 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01974 Aip-Chr10 76900223 76902810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01974 8 268 Eukaryotic Initiation Factors Gene Family AT1G71770 28.525 1.32e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01974 K14411 - gmx:100795907 824.313