Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01973 ATGCTGGTCCATAGCATAAGGTGTGGAAGCTCAAAGTACGTGTCATTAGACTTTGGACCGTTTCTCACTGCAAATTCTGGGATGAAGGTACCTATTGAGATAGTTGTCCTTGATGAAGAGGGGGATAAAATTCAATGCTCTATTAAAGGCATATTTGTTCCTATCTTCGAGGGCCTACTCGCTGAGGGCAACGTGTACGTGGTCACTAATTTTGCAGTTGATTTGAATACCATCAAGTTCAAGTCTACTAGACACGAATTTAGAATCAACTTCAAGAGGGACACGATTGTGCGTTCGGTACAAGATTCTTCAGTTCCATTGAACGGATTCAATTTTGTTCAATTCAAAAAAATTCATGCAGGGTCTAAAGAAGATGGTTATTTAGTTGATGTGATAGGTCAGCTTGCCTCTAAGGGTAACTTGGTCGAGTTCACACGGGACGGGAAGCCGTCAAGTTATATCACCATAGAAGTTGATGATCTTGAGGTGAACAAATTGGATCCTGTTGACGGACAAAACATAATGCCGTTGGTCTATGATCAACCTGTTTCCATTGAGGAAGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCGGAGATAAAGGATCATAATAAGGATGCTGTATTTGTTACTTCCGGAACGATTAAGAAAGTTGAGACTGAGTTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTAAGGGAACTTGAGAAAAGATATTTTTGTCCCAATTGCGTTGAAGACTATGGGTTTTATGTGCTAGGGTACAGTATCCACGTAAGGGTGATAGACCACACCGACGCTGCCTCTTCTATTTTGTTCGATGGAAAAGCTGCAAAGTTTCTTGGAGTTTCTGCCAATGACCTTAGGCAGTCTTGTGTGACTAAGGACCTTTTGTTGCACGAAAATTTTGAACTACTGAGCTTGTCTACTGGTCCATACGACACTTCTAAGGATTGTGAAAGTGAGTCAACTCCATCACCTGCAATTAATGAGAAACATAATTCTAAGATTCTCGAAGCTAAGAAACATATGGAAGAGGTTGGAGAGGAGTCAGTTTCATCCAAATCTAAGAAAGGAAAGTGGGTTGCGATGAAGGACTAA 1116 0.4104 MLVHSIRCGSSKYVSLDFGPFLTANSGMKVPIEIVVLDEEGDKIQCSIKGIFVPIFEGLLAEGNVYVVTNFAVDLNTIKFKSTRHEFRINFKRDTIVRSVQDSSVPLNGFNFVQFKKIHAGSKEDGYLVDVIGQLASKGNLVEFTRDGKPSSYITIEVDDLEVNKLDPVDGQNIMPLVYDQPVSIEEDFLRLSVYKTIAEIKDHNKDAVFVTSGTIKKVETEFGWWYKGCKKCRRGLRELEKRYFCPNCVEDYGFYVLGYSIHVRVIDHTDAASSILFDGKAAKFLGVSANDLRQSCVTKDLLLHENFELLSLSTGPYDTSKDCESESTPSPAINEKHNSKILEAKKHMEEVGEESVSSKSKKGKWVAMKD 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01973 371 Coils Coil 335 355 - -
Aip10g01973 371 MobiDBLite consensus disorder prediction 339 371 - -
Aip10g01973 371 CDD RPA1_DBD_C 198 293 IPR013955 -
Aip10g01973 371 SUPERFAMILY Nucleic acid-binding proteins 24 102 IPR012340 -
Aip10g01973 371 MobiDBLite consensus disorder prediction 318 371 - -
Aip10g01973 371 SUPERFAMILY Nucleic acid-binding proteins 195 297 IPR012340 -
Aip10g01973 371 MobiDBLite consensus disorder prediction 318 336 - -
Aip10g01973 371 Gene3D - 104 172 IPR012340 -
Aip10g01973 371 Gene3D - 17 103 IPR012340 -
Aip10g01973 371 CDD RPA1_DBD_A_like 32 97 - -
Aip10g01973 371 Pfam Domain of unknown function DUF223 33 120 IPR003871 -
Aip10g01973 371 Pfam Replication factor-A C terminal domain 210 297 IPR013955 -
Aip10g01973 371 PANTHER REPLICATION FACTOR A 1, RFA1 208 293 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g01973 371 PANTHER REPLICATION FACTOR A 1, RFA1 29 141 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g01973 371 PANTHER BNAC01G35430D PROTEIN 208 293 - -
Aip10g01973 371 PANTHER BNAC01G35430D PROTEIN 29 141 - -
Aip10g01973 371 Gene3D - 190 315 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01973 Aip-Chr10 76799485 76802809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01973 206 295 Core DNA Replication Machinery Family AT5G61000 30.769 3.95e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01973 - - aip:110272129 341.273