LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g01964	ATGAATCACTTACCACGATTTTTAGGCCGTAGGAATAATAATAAGAAGCAAGACGGCATGGGCGTGGATCCCAAGAAGGCCCGAATGTCGAAGCCACGTCTCGAGCGCCGCAACGCCGCCAAGCACTTCGATTACGACGCCGGCTCATCGTCTTCGTCGTTCGATGACTACTCCACTTCCTCCTCTTCCGGCGGCGGCGTTTCGGTGCTCTACACGCGCTCGATGGAGTTCTACGATCACAAGAGCTTCAGAATCGAGGGCGTCGAGGGCGAGTTCGACCGGATTTGTCAGAGCCTCGGCCTCTCTGGCCCAGAGGACTTCGCAATTCCCGCGGCGGCTTGGGAGGCCATGAAGGTTCGGTCTTCTTCGGATATTCTTCCGAGGTTGAAGCTTCGCGACTTGGATGAAGTCAAGGAGAGTGAAGAAATTGGGATGAAGGAAGGTCAATTTGGGGATAGTTCCCAACCTAAGGCTCCTAATCCGGTTTCGGTTTCTGATCAATGCGTTCAAGAGATTGCTTGCAGAAGTTGCTTCACTCTCGGTGGTTGCGTTGGCGGAGATGATGGAGTTGAAGTTGGGGATAATTGCGAGGATAGCGTTCCGGTCTGGGCTTCTGATGAATCTGTAAAAGACGGCGGTGATCGCGGAAACTACAACACTACTGTAACTGCTGATAGTGGCCGCAGCAGTGGCAGTGGCAGTGGCGGAGGTATCAAGGGCTTTCGGCCCCCTATGCTGAAACCAGCGCCGGGGAGTAGGGTTTCGGTTGTGGACAACGCGTCCTTCACATGGGACCTGTTGAGGGATTTTGCTCCACAAGGTGAAGGGAAGGAGAATTTCGTGGAATTCAGTGATTCAGATGATGATCATCGAGGATTGCATGGTGAATTAGAGAATAGAGAAAAAGAGGAAGAGGAAGAGGAAGGAGGTAGAGGGGGTGATGGGAAGAAAGAAGAAGAAGAGAATGCATTGAGATTCGCAGAGATTGTTGCGGAGCTTACTGGGTCATGTTCTTTCACAACTTCGAATGGAGATGATTCTTCTAGCACTACCACGGATCCTAGGTCCAATAATATATCTCCTAATGGAAGATTTAAGCGTATTATTACCCACTGGCAGAAGGGTGATCTTTTGGGTCGCGGTTCCTTTGGGTCTGTCTACGAAGGAATTGCAGGGGATGGGTTCTTCTTTGCTGTAAAAGAAGTTTCACTGCTTGATCAAGGGAATCAGGGAAAGCAAAGTGTCTATCAATTGGAACAGGAGATTGCACTTTTGAGTCAGTTTCAACATGAGAATATAGTTCAATACTATGGTACAGAAATGGATGACTCAAAGCTGTATATCTTTCTTGAGCTTGTAACCAAAGGTTCTCTTGCAAGCCTCTACCATAGGTATACCCTTCGAGATTCCCAAGTATCTGCATATACCAGACAGATTCTGCACGGCCTAAAGTATCTTCATGATAGAAATGTCATCCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCAAATGGATCTGTCAAGCTTGCCGATTTTGGATTGGCAAAGGCAACCAAATTGAATGATGTTAAATCAATGAAGGGAACAGCATTTTGGATGGCCCCAGAGGTTGTGAAAGGAAAAGCCCGAGGTTATGGGCTTCCAGCTGATATATGGAGTTTGGGGTGCACTGTGTTGGAGATGTTGACGGGGAAAATCCCATATTCTCACTTGGAATGCATGCAGGCACTGTTTAGAATTGGAAAAGGTGAACCACCTCCGGTACCTGATTCTCTTTCAAGAGATGCAAATGATTTCATCCTGCAGTGCCTAAAAGTGAATCCTGATGATCGTCCCACGGCTACTCAACTCTTAACCCATTCATTTGTCCAACGGTCACTTTCTCAGTCATCTGGCTCTGCATCTCCTTTCATTCCTAGAAGACGGGGTTAA	1938	0.4773	MNHLPRFLGRRNNNKKQDGMGVDPKKARMSKPRLERRNAAKHFDYDAGSSSSSFDDYSTSSSSGGGVSVLYTRSMEFYDHKSFRIEGVEGEFDRICQSLGLSGPEDFAIPAAAWEAMKVRSSSDILPRLKLRDLDEVKESEEIGMKEGQFGDSSQPKAPNPVSVSDQCVQEIACRSCFTLGGCVGGDDGVEVGDNCEDSVPVWASDESVKDGGDRGNYNTTVTADSGRSSGSGSGGGIKGFRPPMLKPAPGSRVSVVDNASFTWDLLRDFAPQGEGKENFVEFSDSDDDHRGLHGELENREKEEEEEEGGRGGDGKKEEEENALRFAEIVAELTGSCSFTTSNGDDSSSTTTDPRSNNISPNGRFKRIITHWQKGDLLGRGSFGSVYEGIAGDGFFFAVKEVSLLDQGNQGKQSVYQLEQEIALLSQFQHENIVQYYGTEMDDSKLYIFLELVTKGSLASLYHRYTLRDSQVSAYTRQILHGLKYLHDRNVIHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSMKGTAFWMAPEVVKGKARGYGLPADIWSLGCTVLEMLTGKIPYSHLECMQALFRIGKGEPPPVPDSLSRDANDFILQCLKVNPDDRPTATQLLTHSFVQRSLSQSSGSASPFIPRRRG	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip10g01964	645	MobiDBLite	consensus disorder prediction	206	252	-	-
	Aip10g01964	645	MobiDBLite	consensus disorder prediction	45	64	-	-
	Aip10g01964	645	Gene3D	Transferase(Phosphotransferase) domain 1	370	638	-	-
	Aip10g01964	645	PANTHER	MAP KINASE KINASE KINASE-LIKE PROTEIN	78	638	-	-
	Aip10g01964	645	ProSitePatterns	Protein kinases ATP-binding region signature.	378	400	IPR017441	GO:0005524
	Aip10g01964	645	SMART	serkin_6	372	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip10g01964	645	MobiDBLite	consensus disorder prediction	278	319	-	-
	Aip10g01964	645	MobiDBLite	consensus disorder prediction	337	362	-	-
	Aip10g01964	645	SUPERFAMILY	Protein kinase-like (PK-like)	349	630	IPR011009	-
	Aip10g01964	645	MobiDBLite	consensus disorder prediction	280	319	-	-
	Aip10g01964	645	MobiDBLite	consensus disorder prediction	11	43	-	-
	Aip10g01964	645	MobiDBLite	consensus disorder prediction	214	233	-	-
	Aip10g01964	645	Pfam	Protein kinase domain	373	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip10g01964	645	MobiDBLite	consensus disorder prediction	142	162	-	-
	Aip10g01964	645	ProSiteProfiles	Protein kinase domain profile.	372	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip10g01964	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	491	503	IPR008271	GO:0004672\|GO:0006468
	Aip10g01964	645	MobiDBLite	consensus disorder prediction	1	64	-	-
	Aip10g01964	645	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	78	638	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g01964	Aip-Chr10	72525246	72535764	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip10g01964	33	629	MAP Kinase Kinase Kinase	AT4G08500	52.131	5.66e-173	504

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Aip10g01964		Pkinase	4.3e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip10g01964	K13414		-	gmx:100819177	696.041