LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g01958	ATGCGTCCGTCGCAGCCCCGCCGCCTTCCACCCAAGGCCGCCTCTCTCGACCCCAAAATCTGGCGTGCATGCGCCGGAGCATCCGTTCACATCCCCGCCGTGCATTCTAGGGTTTACTACTTTCCGCAGGGCCATCTTGAACAAGCCTTCCCCCCTTCCCTCCACAACAACCACCACCACCATCACCTGAACCCTCTCATTCGCACACTCCCGTTCGTCCTTTGCCGCGTCTCTTCCGTACAATTCCTCGCCGATCCCCTCTCCGACGAGGTATTCGCTAAGCTCCTGCTAAGTCCCATACCCGCCGACGATCGTTCCTCCTCCACCAGCGAGGATCGACCGGCGGAGGAACCGGATTCCATTGGCGGGAACAGGGTCTCCTCGTTTGCAAAGATTCTGACCCCGTCCGACGCAAATAACGGTGGCGGCTTCTCCGTGCCGAGATTCTGCGCGGACTCCATTTTCCCCGCACTCGACTTCAACGCCGACCCGCCGGTACAGGTTCTCTCCGTCACCGATGTTCACGGCGCCACCTGGGACTTTCGTCACATTTACCGTGGAACCCCCCGGCGGCACCTCCTGACAACCGGTTGGAGCAAGTTCGTGAACCACAAGAAGCTCGTCGCCGGTGACTCCGTCGTGTTCATGAAAAACTCCCAGGGCTCCTTGTTCGTCGGCATTAGGCGTACCTTGCGATTCTCTGCCGTGCTGAAGGAGGATCGAGACCCGTGGCTGGAGGAAGAGGAGGAAGAGGATAACAGCAGTGATCCTCCGGTGTTTACGAGGGACGGGAGGGGGAAGGTGACGTTGAAGGCGGTTGCAGAGGCTGCGGAATTGGCGGCGAGGACCATGCCGTTCGAGGTAGTATATTATCCAAGGGCTGGGTGGTCGGATTTCGTGGTGAAGGCTGAGGCTGTTGAGGCAGCAATGAAGGCGGGTTGGTGTCCTGGAATGAGAGTGAAAATGGCTGTGGAGACTGAGGATGCTTCTAGAATGACCTGGTTTCAGGGGACGGTGTCTTCGGCCTCGGTTCCTGATAATGGGCCTTGGAGGGGTTCTCCTTGGCGTATGCTTCAGGTTACATGGGACGAACCTGAGGTCTTGCAGAATGCAAAGCGAATCAGTCCGTGGCAGGTGGAACTTATTTCCACCACACCTACACTGCATACAGTGTTCCCCCCCACAAAAAAGTTTAGAGCTGGGGCATTAAGTGATTTAGAAGGAGACCCTTACTTCCCTATAGCAGGGTTCACTAACTCAACAATGGAACACCTGAGTCAAACATTGTTGGGTTATAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTCCATCAAGTTTTTCCAACTTTTTAAATGATAACTCTCATCTGCATATGGGTAGCAGTTTCTTTGGGAAGACTACAGAGCCTATGTTAAGTACTGTGTCAACAGAGCTAAACATTGGCAACTGCCAATCTGGCGATCTATCACCAGATAGTCCAAGTAGTTTGCGTTCATTTGGCCCAGAGTTTACTGGGACCAACAATAGCAACGTCCCGAAAATTGGTTCTGGTTCATTTCTGCTGTTTGGTAAGATCATAAAACCTGTTGAGGTTGAGTTGCATGATGCTGGTTGCATTGCAGATGATGGCTGTAAGAGCAGCACTGAAACTGAATGCATTGACAAGCCAGTGGGTCATTCTTTGACTTACTCAACATTGCTCAGGCTTGATGTAGAAAGCCAACAACCCTCACAAGTTGAGGCATGTTATCTGTGA	1773	0.5307	MRPSQPRRLPPKAASLDPKIWRACAGASVHIPAVHSRVYYFPQGHLEQAFPPSLHNNHHHHHLNPLIRTLPFVLCRVSSVQFLADPLSDEVFAKLLLSPIPADDRSSSTSEDRPAEEPDSIGGNRVSSFAKILTPSDANNGGGFSVPRFCADSIFPALDFNADPPVQVLSVTDVHGATWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFMKNSQGSLFVGIRRTLRFSAVLKEDRDPWLEEEEEEDNSSDPPVFTRDGRGKVTLKAVAEAAELAARTMPFEVVYYPRAGWSDFVVKAEAVEAAMKAGWCPGMRVKMAVETEDASRMTWFQGTVSSASVPDNGPWRGSPWRMLQVTWDEPEVLQNAKRISPWQVELISTTPTLHTVFPPTKKFRAGALSDLEGDPYFPIAGFTNSTMEHLSQTLLGYNTFPAGMQGARHDLFSPSSFSNFLNDNSHLHMGSSFFGKTTEPMLSTVSTELNIGNCQSGDLSPDSPSSLRSFGPEFTGTNNSNVPKIGSGSFLLFGKIIKPVEVELHDAGCIADDGCKSSTETECIDKPVGHSLTYSTLLRLDVESQQPSQVEACYL	590

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip10g01958	590	MobiDBLite	consensus disorder prediction	102	124	-	-
Aip10g01958	590	Gene3D	-	314	387	-	-
Aip10g01958	590	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	12	589	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
Aip10g01958	590	SMART	B3_2	129	231	IPR003340	GO:0003677
Aip10g01958	590	MobiDBLite	consensus disorder prediction	244	263	-	-
Aip10g01958	590	Pfam	Auxin response factor	276	359	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
Aip10g01958	590	SUPERFAMILY	DNA-binding pseudobarrel domain	125	234	IPR015300	-
Aip10g01958	590	Pfam	B3 DNA binding domain	129	229	IPR003340	GO:0003677
Aip10g01958	590	CDD	B3_DNA	128	229	IPR003340	GO:0003677
Aip10g01958	590	PANTHER	AUXIN RESPONSE FACTOR	12	589	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g01958	Aip-Chr10	70556830	70560617	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip10g01958	16	557	B3 DNA Binding Superfamily	AT1G77850	48.940	9.61e-177	511

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Aip10g01958		B3	3.8e-22	CL0405

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip10g01958	-		-	aip:107624033	1157.13

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