Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01948 ATGGCAGCTAGGTATGATCTCATCAAGTGTATCAATGCTGGTCCAGCGCATAAGGTGTGGAAGCTCAAAGTACGTATCATTAGGCTTTGGACCGTTTCTCAATTTGCAAAATTTGGGATGAAGGCACCTATTGAGATGGTTATCCTTGATGAAGAGGGGGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATCTTCGAGAGCTTACTCGCTGAGGGCAACGTGTACGTGGTTACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGAATCCACTTCAAGAGGACACGATTGTACGTCCGGGGTGGACAGAAATTAAGGGTAACGTTGTGGCAGTCTTTTGCTTTTCATTTGCTCAAATATCTGGAGGAACACCCGTGTCTTACCTATGTGGTTATTCTCCAAATGGGCAAGATGAAATTTTATAGTGGGGTCATGGGTGTTTCCAACACAAACTACAATTCAAAACTGTTTATCAATGTTGAGTTTTCAGCTGCCAGGAATTTCTTTACGAGGGTGAACAAATTGGATCCTGTTGACAGACAAGGCATAATGCCGCTGGTCTATGATCAACCTATTTCAGTTGAGGAAGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCCGAGATAAAGGAGCATAATCAGGATACTGTATTTGTTACAGCCGGAACGATTAAAGAAGTTGACACCGAGTTTGGTTGGTGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTAAGGGAACTTGAGAAAAGATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTCTATGATCCAAGGTACGACATCCACATAAGGGTGATAGACCACACCGATGCTGCCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTGGAGTTTCTGCTAATGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTAATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTACAACTCAAGATGAGGAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACTAATGAGAATTCTCTGGTCTCTGCTTTCCTGGATAAATACAATCCTGACCTTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACGACACTTCTAAGGCTTGTGAGAGTGAGCTAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCGGAGCTAAGAAACATATTGAAGAAGTTGGAGAGGAGTCAGTTTCATCCAAATCCAAGAAAGGAAAGTGGGTTGTGATGGAGGACTAA 1359 0.4121 MAARYDLIKCINAGPAHKVWKLKVRIIRLWTVSQFAKFGMKAPIEMVILDEEGDTIQCTVKDIFVPIFESLLAEGNVYVVTNFGVALNTIKFKPTRHEFRIHFKRTRLYVRGGQKLRVTLWQSFAFHLLKYLEEHPCLTYVVILQMGKMKFYSGVMGVSNTNYNSKLFINVEFSAARNFFTRVNKLDPVDRQGIMPLVYDQPISVEEDFLRLSVYKTIAEIKEHNQDTVFVTAGTIKEVDTEFGWWYKGCKKCRRGLRELEKRYFCPNCIRDYGFYDPRYDIHIRVIDHTDAASFVLFDGEAAKFLGVSANDLRQSCVTKGVEKNSCPEEINKLRDIKFIFKVQLKMRNLNSYEPYVIHVLRMTNENSLVSAFLDKYNPDLGLLSHENSELLSLSTGPYDTSKACESELTPSPAVDEKHNSKILGAKKHIEEVGEESVSSKSKKGKWVVMED 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01948 452 Gene3D - 107 187 IPR012340 -
Aip10g01948 452 Gene3D - 8 106 IPR012340 -
Aip10g01948 452 Pfam Domain of unknown function DUF223 45 104 IPR003871 -
Aip10g01948 452 PANTHER BNAC07G49340D PROTEIN 115 378 - -
Aip10g01948 452 SUPERFAMILY Nucleic acid-binding proteins 215 364 IPR012340 -
Aip10g01948 452 SUPERFAMILY Nucleic acid-binding proteins 15 104 IPR012340 -
Aip10g01948 452 Pfam Replication factor-A C terminal domain 230 353 IPR013955 -
Aip10g01948 452 CDD RPA1_DBD_C 218 351 IPR013955 -
Aip10g01948 452 Gene3D - 210 376 IPR012340 -
Aip10g01948 452 CDD RPA1_DBD_A_like 21 105 - -
Aip10g01948 452 PANTHER REPLICATION FACTOR A 1, RFA1 115 378 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01948 Aip-Chr10 69283573 69287425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01948 230 315 Core DNA Replication Machinery Family AT5G61000 32.184 3.31e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01948 - - adu:107477146 624.394