Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01940 ATGGGGGTTTGCACTTCAAAGCCTCACAAACCCAACCCTTACGCTTCTCGGGAACCTGAAGCTGAACCTTACGATCCCTCACAACAAATCCCCAGAACCCCTCTCACTCCCCCCGGTGACCGGAAAGATGACGTCATCGCCGGTAAACAGTCGCCGTTCTTCCCCTTCTACAGCCCAAGCCCTGCACGCTTCCTCAAGAAGTCTCCGGCGACCGGAGGAGGGAACAAGAGTGCCAGCTCGACGCCGAGGAGGTTTTTCAGGCGACCGTTCCCGCCTCCGTCGCCGGCGAAGCACATAAGGGCTGTGTTGGCTAGACGGCAGGGAAAGAAGGCGGCAACGGCAATACCGGAGGAAGGAGAGGAGGACGGCGGAGGAGGCGCCGCCGATTTGGATAAGAGATTCGGATTCTCGAAGGAGTTCACTAGTAGGCTTGAGGTTGGGGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTACAAGAAGGGTGAGCTTAAGGGTCAGCAAGTTGCTGTTAAAGTCATCCCAAAAGCTAAGATGACAACAGCAATTGCAATTGAAGATGTGAGAAGGGAGGTTAAGATATTGCGAGCTTTGAACGGACACAAGAATCTGGTACAATACTATGATGCATTTGAAGATCAAGATAATGTCTACATTGTGATGGAGTTATGCGAAGGTGGCGAGCTTTTGGATAGGATACTATCAAAAGGAGGGAAATACTCAGAAGATGATGCGAAGGCTGTGATGGTACAAATACTAAATGTTGTTGCATTTTGTCATCTTCAAGGTGTGGTGCATCGAGATCTTAAGCCAGAGAATTTTCTGTATACGTCGAAGGATGAAAGTTCAGAGTCAGAATTAAAAGCAATTGACTTTGGGTTATCTGACTTTGTCCGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATACTATGTGGCCCCAGAAGTTCTCCATAGATCATACAGCACTGAGGCTGATGTGTGGAGCATAGGCGTGATCGCATATATTCTTTTGTGTGGTAGTCGCCCATTTTGGGCCCGAACGGAGTCTGGTATCTTTAGGGCAGTTTTGAAAGCTGATCCCAGCTTCGATGAGGCTCCTTGGCCTTCTTTATCTACAGAAGCAAAAGATTTTGTCAAACGCCTACTGAATAAGGATCCACGGAAACGAATATCTGCTTCTCAAGCTCTAAGTCACCCTTGGATAAGGAATTACAATAATGTAAAAGTCTCACTTGATCTTTTAATATTTAAGCTCATGAAAATCTATATGCGATCATCATCCTTGCGTAAGGCTGCTTTAAGGGCCTTGTCCAAGACATTAACTGCTGATGAACTCTATTATCTAAGGGAGCAATTTGCATTGTTAGAACCAAGCAAAAATGGCAGCATATCCTTAGAAAACATTAGCAAGGCCTTGATGAAACATGCAACGGATGCCATGAAAGAGTCTCGCATCCCTGACTTTCTTGCCTCGCTAAATCCATTACAATATAGAAGAATGGATTTTGAAGAATTCTGTGCTGCTGCATTAAGCGTACATCAGCTCGAAGCTCTTGATCGCTGGGAACAACATGCCCGATGTGCTTACGAGCTCTTTGAGAAAGATGGAAACAGGGCTATCGTTATTGAAGAACTTGCATCGGAACTTGGGCTCGGTCCTTCTATCCCTGTTCATGTGGTTCTTCATGACTGGATACGGCACACCGATGGAAAGCTAAGCTTTCTTGGCTTTGTCAAATTATTACATGGTGTGTCTAGCAGAAGTCTTGCAAAGGTTCAGTAA 1803 0.4615 MGVCTSKPHKPNPYASREPEAEPYDPSQQIPRTPLTPPGDRKDDVIAGKQSPFFPFYSPSPARFLKKSPATGGGNKSASSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKAATAIPEEGEEDGGGGAADLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARYKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHKNLVQYYDAFEDQDNVYIVMELCEGGELLDRILSKGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSESELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSTEAKDFVKRLLNKDPRKRISASQALSHPWIRNYNNVKVSLDLLIFKLMKIYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLENISKALMKHATDAMKESRIPDFLASLNPLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01940 600 CDD STKc_CAMK 145 407 - -
Aip10g01940 600 SMART serkin_6 144 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g01940 600 Pfam Protein kinase domain 145 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g01940 600 Gene3D Phosphorylase Kinase; domain 1 146 233 - -
Aip10g01940 600 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 594 - -
Aip10g01940 600 ProSiteProfiles Protein kinase domain profile. 144 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g01940 600 MobiDBLite consensus disorder prediction 1 128 - -
Aip10g01940 600 PANTHER CDPK-RELATED KINASE 2 39 594 - -
Aip10g01940 600 SUPERFAMILY Protein kinase-like (PK-like) 140 447 IPR011009 -
Aip10g01940 600 Gene3D - 431 590 - -
Aip10g01940 600 Gene3D Transferase(Phosphotransferase) domain 1 234 430 - -
Aip10g01940 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Aip10g01940 600 SUPERFAMILY EF-hand 436 590 IPR011992 -
Aip10g01940 600 ProSitePatterns Protein kinases ATP-binding region signature. 150 176 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01940 Aip-Chr10 68499206 68504638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01940 1 596 EF-hand Containing Proteins AT3G50530 71.969 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aip10g01940 Pkinase 5.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01940 - K00924 gmx:100798913 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01940 10 68499206 68504638 Aip10g01940 10 68499206 68504638 ECH
Aip05g00685 05 8603027 8607720 Aip10g01940 10 68499206 68504638 PCT