Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01895 ATGTTGTCTGAATCTTTGGAACACAAGGGAAAGGATATCACTGAATTAAATGGTAACATACTTCAATCCCCTATAAGTCAACAGCCCCATAGCTCCTCTGATGGTTCAGTAGCTATTCTTTGGGACATTGAAAACTGTCCTGTTCCGAGTGATGTCCGCCCTGAAGACGTAGCAGGAAATATAAGGATGGCGTTGCAAGTGCATCCAGTAATTCAAGGAACTGTTATGGTATTTTCTGCTTATGGTGACTTCAACGCTTTCCCTAAGCGACTTAGAGAGGGATGTCTAAGAACTGGTGTTAATCTCATTGATGTTCCTAATGGGAGAAAAGATGCTGCTGATAAAGCAATCTTGGTTGACATGTTTTTATTTGCTCTTGACAACCCTCCCCCATCATCTATTATGCTAATATCTGGAGACGTGGACTTTGCCCGAGCACTTCACATTCTTGGACAACGGGGATACACTATAATTCTTGTCATCCCTTCTGGGGTGGGTGTTTCATCTGCTTTATGCAATGCCGGAAAGTTTGTCTGGGATTGGCCTAGCGTTGCTCGTGGAGAAGGATTTGTTCCCCCGGCAAAGGCTTTAGTACCACCTCGTGGAGGTTCAGTTGAGGTTGCTGGATATTTGATGGGGTGCCATATTAATGACAACTTCGAGGGACAAAATGAGGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGATTATATAACTCAAGGGATTTCTCTATGGTTTCACAATCTCTATCTGAATACAATTGTACCGCATCGAACATGGCTGGCTTACCGACAACTATGAGATCACACAGCCTTCCACCTGGGATGATTGATGTTTCAGGAATATCTATGCCTTCTAGTGACAATAATGAAGGCCAGCTTTGGGGCCCTATGTCTAGCGATTTAAATGTTCTCAAAGGCCAGTTGGTAAGGTTGCTTGAACTTTCTGGAGGGTGCCTGCCTCTGGCTCGAGTTCCAACAGAGTATCAGAAAGCTTATGGAAGAACTCTTTATGTATCTGATTATGGAGCAATTAAGTTAGTCAATCTTTTCAAGAAGATGGGTGATACAATGGCAGTGGAAGGGAAAGGTCAGCGTAAATTTGTGTATCTCAGAAACTTCAAGGTAGGCCCGAGCGCTCCCCCATTGGCTCTAGCAAAGAAAGACAAGAAAGGAAAGGGGCTTCCAGAAGAGAATATGAATACTGTCAACGGTGGTGGCTCTTCAGATGAGTTCTCAGATGAAGAAAGACTAGTCATGGAAGAACATGATGAGAGAAATTGTGTAGGAAAGGGCAGTCAAAGGAGAGCAGCTATCAATGACCGTGCTCTTGAGCAGTTCAAGTTCGAGCTTCAAGAGATTCTAGTCAGCTACTCGTGTCGAATATTCCTAGGTTGTTTTGAGGATATATACCAACAAAGGTACAAGAGACAATTGGAATATCAGAGACTTGGAGTGAACAAGTTGGAGGATTTGTTTGAGAAAGTCAATGATATTGTAGTATTGGTTGAGGAACCAGGAAGCAAGAGGAAGTTCCTTGCTCCAGTGGGGGGTTAG 1560 0.434 MLSESLEHKGKDITELNGNILQSPISQQPHSSSDGSVAILWDIENCPVPSDVRPEDVAGNIRMALQVHPVIQGTVMVFSAYGDFNAFPKRLREGCLRTGVNLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFARALHILGQRGYTIILVIPSGVGVSSALCNAGKFVWDWPSVARGEGFVPPAKALVPPRGGSVEVAGYLMGCHINDNFEGQNEEEAIVYRGMSQRLYNSRDFSMVSQSLSEYNCTASNMAGLPTTMRSHSLPPGMIDVSGISMPSSDNNEGQLWGPMSSDLNVLKGQLVRLLELSGGCLPLARVPTEYQKAYGRTLYVSDYGAIKLVNLFKKMGDTMAVEGKGQRKFVYLRNFKVGPSAPPLALAKKDKKGKGLPEENMNTVNGGGSSDEFSDEERLVMEEHDERNCVGKGSQRRAAINDRALEQFKFELQEILVSYSCRIFLGCFEDIYQQRYKRQLEYQRLGVNKLEDLFEKVNDIVVLVEEPGSKRKFLAPVGG 519
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01895 519 Pfam NYN domain 37 176 IPR021139 GO:0004540
Aip10g01895 519 Pfam OST-HTH/LOTUS domain 445 509 IPR025605 -
Aip10g01895 519 Pfam OST-HTH/LOTUS domain 304 369 IPR025605 -
Aip10g01895 519 PANTHER LIMKAIN B LKAP 9 514 IPR024768 GO:0005777|GO:0010468|GO:1903231
Aip10g01895 519 PANTHER - 9 514 - -
Aip10g01895 519 MobiDBLite consensus disorder prediction 387 412 - -
Aip10g01895 519 CDD PIN_limkain_b1_N_like 37 162 - -
Aip10g01895 519 CDD LOTUS 303 372 - -
Aip10g01895 519 Gene3D - 29 182 - -
Aip10g01895 519 ProSiteProfiles OST-type HTH domain profile. 444 518 IPR025605 -
Aip10g01895 519 ProSiteProfiles OST-type HTH domain profile. 302 374 IPR025605 -
Aip10g01895 519 CDD LOTUS 445 508 - -
Aip10g01895 519 Gene3D - 300 371 IPR041966 -
Aip10g01895 519 Gene3D - 440 513 IPR041966 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aip10g01895 Aip-Chr10 59990723 59992282 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01895 35 187 C2H2 Transcription Factor Family AT5G61190 43.137 1.35e-28 119
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01895 - - ahf:112715639 1004.97