Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01882 ATGCCTGGCAGTTTAGAACCGTTGGATTTGGGGGTTCAGATTCCGTACCACTTCAGGTGCCCAATCTCGCTTGAGCTTATGCGAGACCCGGTCACTGTCTGCACCGGTCAGACCTACGACCGTCCAAGCATCGAGTCATGGGTGGCTACCGGCAACACCACCTGTCCGGTCACACGAGCACCGCTAACGGATTTCACTCTAATCCCTAACCACACACTCCGACGGCTAATCCAAGAATGGTGCGTCGCCAACCGTGCTTTTGGCGTCGAGCGGATTCCGACGCCGAAGCAGCCGGCAGACCCTTCGATGGTTCGCTCCTTGCTCAACCAAGCTTCGTCAGATTCCGCGCCGACTCAGCTCCGGGTCAACTCGCTCCGCCGACTCAGAGGACTCGCCCGCGACTCGGATAAGAATCGCTCTCTCATTGCTTCCCTCGGCGCCGTTCAGATCTTACTAACTGTCGTTTTCTCATGTAACGGTTCCGACGAGATGAACCATGAGGCGCTTGCGATTCTCGTGATGTTCTCGCTTGGCGAGAATGAATGCGAGTTTGTTGCATCTGATTTGGATAAGATCCGGTACCTGTCAATGCTTTTGTTTCATAGTTCCATGGAGGTCCGTGTTAACTCGGCCGCGTTGATCGAAATCGTTGCCGCCGGGACTCGGCTGCCTGAGCTCCGATCTCAGATCAGCAATGTCGACGAAATCTACGATGGCGTGATTGATTTGCTACGGAACCCGATATCGTTCCCGCGCGCGCTCAAGATTGGGATCAAGGCGCTGTTCGCGCTGTGTCTTGTGAAGCAGACCCGGCACAAGGCGGTGGCAGCGGGTGCGCCGGAGGTTCTCGTCGACAGACTCGCCGATTTCGAGAAGTGCGATGCTGAGAGAGCGCTTGCGACGGTGGAGCTCCTATGCAGAGTTCCGGCAGGCTGCGCGGCGTTCGCTGAACACGCGCTGACGGTGGCACTGCTGGTGAAGATAATACTGAAGATCTCAGAGCGCGCAACAGAGTATGCCGCCGGTGCGCTTCTGGCGCTGTGCTCGGAATCGGAGCGGTGCCAGAGAGAGGCGGTGGCTGCGGGTGTGCTGACTCAGCTTCTGCTTTTGGTCCAAAGCGATTGCACGGAGAGGGCGAAGAGGAAGGCGCAGCTGTTGCTGAAGCTGCTTCGGGATTCGTGGCCACAAGATTCCATTGGAAATTCTGACGAATTTGCATGCAGCCAGGTTTTGGTGGTGCCACTTTGA 1248 0.5697 MPGSLEPLDLGVQIPYHFRCPISLELMRDPVTVCTGQTYDRPSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPSMVRSLLNQASSDSAPTQLRVNSLRRLRGLARDSDKNRSLIASLGAVQILLTVVFSCNGSDEMNHEALAILVMFSLGENECEFVASDLDKIRYLSMLLFHSSMEVRVNSAALIEIVAAGTRLPELRSQISNVDEIYDGVIDLLRNPISFPRALKIGIKALFALCLVKQTRHKAVAAGAPEVLVDRLADFEKCDAERALATVELLCRVPAGCAAFAEHALTVALLVKIILKISERATEYAAGALLALCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDEFACSQVLVVPL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01882 415 Gene3D - 90 404 IPR011989 -
Aip10g01882 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Aip10g01882 415 CDD RING-Ubox_PUB 18 59 IPR045210 -
Aip10g01882 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Aip10g01882 415 SUPERFAMILY RING/U-box 12 90 - -
Aip10g01882 415 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Aip10g01882 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Aip10g01882 415 PANTHER WDSAM1 PROTEIN 4 410 IPR045185 GO:0061630
Aip10g01882 415 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 410 - -
Aip10g01882 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01882 Aip-Chr10 57332769 57334564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01882 1 412 U-box Gene Family AT3G19380 67.780 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01882 - - gmx:100778730 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01882 10 57332769 57334564 Aip10g01882 10 57332769 57334564 ECH