Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01864 ATGGCCATGAGTGTTGAGAATCAAGACCCTAATGACATAGGATTCTTTTGGGATAACCAACCATGGGATGTCTCAAATTTTGATAACTTAGGTCAAAGAGAAACCAAAGAGAACCTACATATAGAAATGCCTCCTCTGCCACCAGCTCCTACCAACCACCTCACACAGGGAGAAATAGAGAAGAAAAATGAAGAATTAACGATGCCGGTTACAAGCAACAAGAAGCGACGCCGAGCTGACGAAGATGGCAAGAGGCCTATGAAGAATGATGGTAATGATCATGATCTCCATATATGGACAGAGAGAGAACGAAGGAAGAAAATGAGGGACATGTTTGCTAATCTTCATGCTATGCTTCCTCAACTTCCTCCTAAGGCAGACAAGTCATCCATTGTGGATGAAGCAGTGAGGCACATCAAAACTCTGCAACAAACGGTTGAGAATCTCGAGAAAAAAAAGCGACAGAGGATTCAATCTCTCTCTGTCTCTGTGTCACCAATTGCGTGCGAATCTGCTGTGACCAACCCTCAGTGGAACCCTTACGACTCATCATCCTTGTCAAGAGATAATAATGCATTAACTATAACCGCCACTCAACATGTTTCTGCTGCTGTTGCAAATAATTCACCGTTTTTTAAGACTTGGGCTTCACAGAATGTGGTACTGAACATGTGTGGAGAGGAAGCACAGTTCAGCATATGTGCAGAGAAGAAGCCTAGTCTCTTCACCACCATTGCTTTTGTGCTCCAGAAGCATAAGGTTGACGTCATTTCTGCTAGTATCTTGTGCAATCATAATGTCAATAGATACATGGTCCTTACTCATGCAAGTAGGGCTTTACTTCAATTTGCAGACGCAAATACAGTGGAGGAAACTTTCAAGCGTGCAGCTGAGGAGATTATGATGTGGCTCGGCTAA 918 0.4325 MAMSVENQDPNDIGFFWDNQPWDVSNFDNLGQRETKENLHIEMPPLPPAPTNHLTQGEIEKKNEELTMPVTSNKKRRRADEDGKRPMKNDGNDHDLHIWTERERRKKMRDMFANLHAMLPQLPPKADKSSIVDEAVRHIKTLQQTVENLEKKKRQRIQSLSVSVSPIACESAVTNPQWNPYDSSSLSRDNNALTITATQHVSAAVANNSPFFKTWASQNVVLNMCGEEAQFSICAEKKPSLFTTIAFVLQKHKVDVISASILCNHNVNRYMVLTHASRALLQFADANTVEETFKRAAEEIMMWLG 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01864 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 95 163 IPR036638 GO:0046983
Aip10g01864 305 SMART finulus 100 148 IPR011598 GO:0046983
Aip10g01864 305 PANTHER TRANSCRIPTION FACTOR BHLH95 11 303 - -
Aip10g01864 305 Coils Coil 132 159 - -
Aip10g01864 305 Pfam Helix-loop-helix DNA-binding domain 100 143 IPR011598 GO:0046983
Aip10g01864 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 142 IPR011598 GO:0046983
Aip10g01864 305 MobiDBLite consensus disorder prediction 61 94 - -
Aip10g01864 305 CDD bHLH_AtbHLH_like 97 150 IPR045239 -
Aip10g01864 305 Gene3D - 92 163 IPR036638 GO:0046983
Aip10g01864 305 PANTHER - 11 303 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01864 Aip-Chr10 53088992 53091974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01864 22 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.853 4.09e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip10g01864 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01864 - - adu:107469983 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01864 10 53088992 53091974 Aip10g01864 10 53088992 53091974 ECH