Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01812 ATGACTTCCCCTACGGACCGCCTCACAACGGAGCAGGAACTCACCGTCATCGTTGCCGCCCTCACCAACGTCGTCACCGGATCCACCTCCTTCTCCTCCTCCCCGGCGGATTTCATCCGCCACGCATCTCAGCCCTCTGCTGCCGTCGGCTCCAGCGGAAGCTGTGGCGGAGTATTCGAGGACACGTGTCGCGAATGCAACATCAAGGGATGTTTAGGGTGCAACTTCTTCCGCGAAGAGAAAAAAGTTAACAGCGGCAACAGCAAGAAAAGTAGCATTCAGAAAAGGGCGAAGAAGAAGTACAGGGGAGTGAGGCAGAGACCGTGGGGAAAATGGGCTGCCGAGATTCGCGACCCGCGGCGTGCGGCTCGCGTGTGGCTCGGCACATTCAACACGGCGGAGGAGGCCGCCATGGCTTACGACAAAGCCGCAATCGAGTTCCGTGGACCACGAGCCAAACTCAATTTTCCCATGGTCGACGAGTCCCTTAGGTCCCAGGCCCAACAGCCCAACGTTAATGAGGCAATTGTGAAGGACGAGAATTCAAAGGAGGAGGAAATCGAAACGATGCCGTTTGGGAATAAAGAGAGCGAGTTCTGGGAAAGAATGGGAGATGCTGATTTTCAGCAGCTTATGATGATGATGGATTTTGCTGGAGATTCTTCTGATTCTGCGGCTACAGGGAACACCCTCAGTTCTTGA 702 0.5499 MTSPTDRLTTEQELTVIVAALTNVVTGSTSFSSSPADFIRHASQPSAAVGSSGSCGGVFEDTCRECNIKGCLGCNFFREEKKVNSGNSKKSSIQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAAMAYDKAAIEFRGPRAKLNFPMVDESLRSQAQQPNVNEAIVKDENSKEEEIETMPFGNKESEFWERMGDADFQQLMMMMDFAGDSSDSAATGNTLSS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01812 233 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Aip10g01812 233 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Aip10g01812 233 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Aip10g01812 233 SUPERFAMILY DNA-binding domain 100 158 IPR016177 GO:0003677
Aip10g01812 233 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 226 - -
Aip10g01812 233 Gene3D AP2/ERF domain 99 159 IPR036955 GO:0003700|GO:0006355
Aip10g01812 233 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
Aip10g01812 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 4 226 - -
Aip10g01812 233 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Aip10g01812 233 CDD AP2 99 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01812 Aip-Chr10 45950522 45951666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01812 6 160 AP2-EREBP Transcription Factor Family AT4G34410 46.703 8.01e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip10g01812 AP2 8.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01812 - - adu:107469741 447.588