Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01780 ATGAATGTGGACAACGAAATCCCAGTGCAATCTTTTGAATTTGTGGATATACTGGATATACTATTTTCTACGCGAGATGATGTATACCTCATTGACAGAACCAGATCTACACGCCGAAAGAATGGAAAGACAGAACCAGACGAGGATTTAAGGCTTGCAGCTGTGAAGACCGAGGAAGAAGAAGAAGAATACCTCACCATACACCAGACGTTGAAGGAACGCAGCACCAGAACCAGACGCGGGCACACTGCGATGCAACGAGAAATCGACGGAGCCGACGCAGGAGAAAGACTGAACGGAGTGGGCGAGTGGCGACAGACGACAGTAACTGAGGGCTGGAGTCTGGAGCAGAAGAACAAAATTGAAAAAGAGAAGGAGAAGGTGACTTTGAAGTCTGTGCTGCTACAGAGTAAACAAATTCCAATCACCAAAGCCAACATTGCTGGAATTCTGCAAATCCCTCCCAAGCTGAAGCAGCGATGTGCTTACGACAAAGCACTCCATGATCGGAGCCTGAATCCCTTGGACTGGGATAAGATTCTTGAGAAGATTGCAGTCTCGGACAGTCAGTGGGTCCTCAACACCGATCAGAAGAGGGAACCAATCGGCATCATACTCAGTCAGCTTCCTCCTTCACAAACCCTAACGACACTTCTTAGTCACCTGAGCTGCCCCCTGCGTATCAAGAACCCTAAAGGTAAGCCATGGAAGACCAGAAGACGGTTAGCTCGCCAGAAGAAAGCTGTGAAGATCTTTCCCAGGCCTACCGCTGGACCTCTCAGACCAGTTGTTCATGGGCAGACTTTGAAATACAACATGAAAGTCAGAGCTGGCAAGGGATTTTCTCTTGAAGAACTTAAGGCTGCTGGCATTCCGAAAAAGCTAGCTCCAACCATAGGCATTGCTGTTGATCACCGTCGCAAGAACCGTTCTTTGGAGAGTATGCAGGCTAATGTTCAGCGGCTGAAGACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGTGCACGCAAGGTTAAGGCTGGTGATTCTACCCCTGAGGAACTTGCAAATGCCACCCAAGTCCAGGGTTCATGCTTGCCAATTGTGAGGGAGAGGCCATCAGTAGAGCTTGTTAAGGTTACAGATGAAATGAAGGCATTTAAGGCTTACTACAAGCTTCGTCTTGAACGCACAAACAAAAAGCATTATGGTGCTAGACTGAAGAAGGCTGCTGAGGCAGAAAAGGAAGAAAAGAAGTAA 1242 0.4775 MNVDNEIPVQSFEFVDILDILFSTRDDVYLIDRTRSTRRKNGKTEPDEDLRLAAVKTEEEEEEYLTIHQTLKERSTRTRRGHTAMQREIDGADAGERLNGVGEWRQTTVTEGWSLEQKNKIEKEKEKVTLKSVLLQSKQIPITKANIAGILQIPPKLKQRCAYDKALHDRSLNPLDWDKILEKIAVSDSQWVLNTDQKREPIGIILSQLPPSQTLTTLLSHLSCPLRIKNPKGKPWKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRAGKGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESMQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSCLPIVRERPSVELVKVTDEMKAFKAYYKLRLERTNKKHYGARLKKAAEAEKEEKK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01780 413 PANTHER 60S RIBOSOMAL PROTEIN L13 237 413 IPR001380 GO:0003735|GO:0005840|GO:0006412
Aip10g01780 413 Hamap 50S ribosomal protein L13e [rpl13e]. 251 334 IPR001380 GO:0003735|GO:0005840|GO:0006412
Aip10g01780 413 Pfam Ribosomal protein L13e 237 391 IPR001380 GO:0003735|GO:0005840|GO:0006412
Aip10g01780 413 ProSitePatterns Ribosomal protein L13e signature. 276 290 IPR018256 GO:0003735|GO:0005840|GO:0006412
Aip10g01780 413 Gene3D - 373 413 - -
Aip10g01780 413 PANTHER 60S RIBOSOMAL PROTEIN L13 237 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01780 Aip-Chr10 42709576 42719183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01780 237 398 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 86.420 2.89e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01780 K02873 - gmx:100805957 311.997