Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01778 ATGGATCATAGAAGCGGAGGAGGAGGAATGGACATACCCATAATGCATGAGAGTGATCGCTATGAGTTAGTTAGAGATATTGGTTCTGGAAACTTCGGGGTCGCCAGGCTCATGAGGGATAAGCACACCGACCAACTTGTTGCCGTTAAGTATATTGAGAGGGGTGAAAAGATCGATGAAAATGTACAGAGGGAAATTATAAATCACAGGTCACTAAGGCATCCCAATATTGTGAGGTTCAAGGAGGTTATATTGACCCCAACGCATTTGGCTATTGTCATGGAATATGCCTCGGGAGGAGAGCTATTTGAACGAATATGCAATGCAGGGCGCTTTAGTGAGGACGAGGCACGTTTCTTCTTCCAACAACTTATATCTGGGGTTAGCTACTGTCATGCAATGCAAGTGTGTCATCGTGATTTGAAGTTGGAAAATACATTGTTGGATGGTAGTCCAGCTCCTCGCTTGAAGATTTGTGATTTTGGTTATTCAAAGTCTTCAGTGCTACATTCACAACCAAAATCTACAGTTGGCACCCCTGCATACATTGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTAACCTTATATGTGATGTTGGTTGGTGCTTATCCATTTGAGGATCCAGAGGAACCTAAAAATTTCCGCAAAACAATACACAGGATTTTGAATGTCCAATATTCAATTCCTGACTATGTTCATATATCTCCTGAGTGCCGCCATTTGATCTCAAGGATTTTTGTTGCTGATCCTGCACAGAGAATAAGTATACCGGAGATCAAAAACCATGAATGGTTCTTGAAGAATCTACCAGCTGATCTCATGGATGGGGACACAATGAGCAACCAGTATGAGGAGCCTGATCAACCGACGCAAAGCATTGAAGAGATCATGCAGATAATATCCGAGGCCATGATTCCTCCGGCCGGAAGCCAGTCCCTCAACCAGTACCTCACCGGAAGCTTGGACATTGACGATGACATGGATGAGGATCTAGACAGTGATCCTGACCTTGACCTTGATAGCAGTGGAGAAATTGTCTATGCTATGTAA 1086 0.4365 MDHRSGGGGMDIPIMHESDRYELVRDIGSGNFGVARLMRDKHTDQLVAVKYIERGEKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAQRISIPEIKNHEWFLKNLPADLMDGDTMSNQYEEPDQPTQSIEEIMQIISEAMIPPAGSQSLNQYLTGSLDIDDDMDEDLDSDPDLDLDSSGEIVYAM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01778 361 SMART serkin_6 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g01778 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Aip10g01778 361 CDD STKc_SnRK2-3 20 276 - -
Aip10g01778 361 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Aip10g01778 361 ProSiteProfiles Protein kinase domain profile. 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g01778 361 PANTHER SERINE/THREONINE KINASE 12 356 - -
Aip10g01778 361 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E 12 356 - -
Aip10g01778 361 Pfam Protein kinase domain 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g01778 361 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Aip10g01778 361 SUPERFAMILY Protein kinase-like (PK-like) 15 319 IPR011009 -
Aip10g01778 361 Gene3D Transferase(Phosphotransferase) domain 1 97 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01778 Aip-Chr10 42682058 42685858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01778 20 281 CBL-interacting serine-threonine protein kinases AT5G25110 44.689 6.19e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Aip10g01778 Pkinase 2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01778 K14498 - qsu:112032862 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01778 10 42682058 42685858 Aip10g01778 10 42682058 42685858 ECH