Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01710 ATGAGAAAAGGATACACAATTGTGGCATCATTTAAAAAGTGTAGCGTTAGAATTGAAGTCACCCTTTCAGTAGAGAAGAAAACCCTCCTACACTCCTGCACCGCGAGAAGGAAACCCTGCCTCCTGTACCATGCGAAGAGCGTGAAGCCTCACCGTCGCGAAGATCATCGCACCCCAGTCCCCACTCACCACTCAGCGCCACACCGTTGTGAAGATCATGAAGCTCACACCGTTGTGAACCCTCCTGCACTGATCGTCGCGCGCCGCCCATACCACCGTCGTGAACCCTTCTGCACTGATCTCCGCACCACTCACGACTTCGCCACTCACCGTCACTTGCGCCCTCCTGCATTAAGCGTCAGCTGTGCCCTCACCATCGTTGTCTCTGCGCTCACATCGTCGAGAAGGTGCTGTGTTAAGGAAGAAACAAATTTTTTTCTGCAACCCAGCATGTTTAAGGAGAGTCGCAAGCTTCTACTGTTGAAATCGGGAAAGAAGGACTACTCAACGGCGATTCTTGAGCGGAAGAAGTCGCCGAACCGTCTTGTGGTGGATGAAGCCATCAACAACGACAACTCCGCCGTGTCCATGCACCTTGATACCATGGAGAAGCTCCAGCTCTTCCGTGGCGACACTATCCTCATCAAGGGCAAGAAAAGGAGGGATACTGTTTGCATAGCTCTTGCTGATGACACCTGTGAAGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGCGGGTTCGTCTTGGAAATGTTGTGTCCGTGCACCAGTGCCCTGATGTAAAGTATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGCTTACTTCTTGGAAGCTTATCGTGCTGTCAGAAAAGGAGATCTATTTCTTGTCCGTGGAGGGATGAGAAGTATGGAGTTTAAGGTCATTGAAATTGATCCTGGGGAGTACTGTGTGGTTGCTCCAGATACTGTAATCTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAGAGGCTGGATGAAGTTGGATATGATGATGTGGGTGGAGTTAGGAAACAAATGGCACAAATTCGTATTCTACTTTATGGACCCCCTGATTCCAGGAAGACACTGATAGCAAGAGCTGTTACTAATGAAACGGGAGCTTTCTTCTTTTGTATAAATAGACCAGAGATCATGTCCAAACTGGCAAGAGAGAGTGAAAGCAATCTGAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCATCCATCATCTTCATTGATGAAATTGATTCTATTGCACCCAAGAGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAGCTTTTGACTCTTATGGATGGATTGAAATCTCGTGCTCATGTTATCGTTATTGGAGCTACCAATCGCCCAAACAGCATTGACCCAGCATTGAGAAGGTTCGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGCCGACTTGAAGTTCTTCGTATACACACTAAAAACATGAAGCTCTCTGATGATGTAAGTTTCATTGTCTCTTAA 1560 0.4679 MRKGYTIVASFKKCSVRIEVTLSVEKKTLLHSCTARRKPCLLYHAKSVKPHRREDHRTPVPTHHSAPHRCEDHEAHTVVNPPALIVARRPYHRREPFCTDLRTTHDFATHRHLRPPALSVSCALTIVVSALTSSRRCCVKEETNFFLQPSMFKESRKLLLLKSGKKDYSTAILERKKSPNRLVVDEAINNDNSAVSMHLDTMEKLQLFRGDTILIKGKKRRDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGNVVSVHQCPDVKYGKRVHILPIDDTIEAYFLEAYRAVRKGDLFLVRGGMRSMEFKVIEIDPGEYCVVAPDTVIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRILLYGPPDSRKTLIARAVTNETGAFFFCINRPEIMSKLARESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVSFIVS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01710 519 Gene3D - 161 263 - -
Aip10g01710 519 Pfam Cell division protein 48 (CDC48), N-terminal domain 181 262 IPR003338 -
Aip10g01710 519 Gene3D - 264 346 - -
Aip10g01710 519 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 361 515 - -
Aip10g01710 519 Pfam ATPase family associated with various cellular activities (AAA) 361 490 IPR003959 GO:0005524|GO:0016887
Aip10g01710 519 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 162 362 - -
Aip10g01710 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 514 IPR027417 -
Aip10g01710 519 SMART CDC48_N_2 181 264 IPR003338 -
Aip10g01710 519 Gene3D - 360 491 IPR027417 -
Aip10g01710 519 PANTHER AAA-FAMILY ATPASE 162 362 - -
Aip10g01710 519 PANTHER AAA-FAMILY ATPASE 361 515 - -
Aip10g01710 519 ProSitePatterns AAA-protein family signature. 461 479 IPR003960 GO:0005524|GO:0016887
Aip10g01710 519 CDD AAA 361 490 - -
Aip10g01710 519 SMART AAA_5 357 493 IPR003593 -
Aip10g01710 519 Pfam Cell division protein 48 (CDC48), domain 2 282 332 IPR004201 -
Aip10g01710 519 SUPERFAMILY Cdc48 domain 2-like 263 343 IPR029067 -
Aip10g01710 519 Gene3D - 492 516 - -
Aip10g01710 519 SUPERFAMILY ADC-like 177 261 IPR009010 -
Aip10g01710 519 SMART CDC48_2_2 274 335 IPR004201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01710 Aip-Chr10 39808776 39812697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01710 343 514 Calmodulin-binding Proteins AT3G56690 42.132 5.40e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01710 K13525 - gmx:100783508 635.565