Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01657 ATGGCGGCGAGCGATCGCACAGTCTTGCAGTTTTCTTCTTCGTCCTCTTCTTCGACGAGCTTGTCTGCGAGGGTGCATCCTCTGGTTGTGTTCAACATCTGCGATTGCTACGTTCGGCGCCCCGACCAAGCTGAGCGCGTCATTGGAACCCTACTCGGCTCCGTCCTCCCCGATGGCACCGTCGATATTCGCAACTCCTACGCCGTTCCTCATAATGAGTCCGTCGATCAGGTTGCCCTGGATATTGAGTATCACCACAACATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAGTCATAGTCGGATGGTATTCAACTGGTCTTGGAGTTACTGGTGGTAGTGCATTGATCCATGAATTTTATTCTAGAGAAGTACCCAATCCCATACATTTGACTGTTGATACTGGATTCACAAATGGAGAGGGTACCATAAAGGCATATGTTTCAAACAATTTATCTCTCGGAGACCGCCAAATTGCTGCACAGTTTCAAGAAATTCCATTGGATCTTCGTATGGTTGAGGCTGAGCGAGTTGGATTTGATACTCTGAAGTCAACCAACGTTGACAAAATTCCCTCTGATTTAGAAGGGATGGAAATGTCAATGCAACATCTACTAGACTTGATCGATGACATGTACAGATATGTTGATGACGTTGTGGAAGGGCGTGTTGCTCCAGACAATAAAATTGGGCGATATATATCAGATGCTGTAGGCTCCCTTCCCAAATTACCCCCAGATGCTTTTGATAAGCTTATTAATGACAGCTTGCAGGATCACTTGCTCTTGCTATATTTATCTAGCATCACAAGGACACAGCTTAGCTTGGCCGAAAAATTGAACACGGCTGCTCAAATTCTGTGA 867 0.4544 MAASDRTVLQFSSSSSSSTSLSARVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLISHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTNGEGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERVGFDTLKSTNVDKIPSDLEGMEMSMQHLLDLIDDMYRYVDDVVEGRVAPDNKIGRYISDAVGSLPKLPPDAFDKLINDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01657 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 10 287 - -
Aip10g01657 288 SMART pad1_6 22 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aip10g01657 288 Gene3D Cytidine Deaminase, domain 2 10 189 - -
Aip10g01657 288 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 21 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aip10g01657 288 Pfam Maintenance of mitochondrial structure and function 175 281 IPR024969 -
Aip10g01657 288 ProSiteProfiles MPN domain profile. 23 154 IPR037518 -
Aip10g01657 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 10 287 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aip10g01657 288 CDD MPN_eIF3f 24 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aip10g01657 288 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 21 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01657 Aip-Chr10 36920985 36925112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01657 2 288 Eukaryotic Initiation Factors Gene Family AT2G39990 77.663 7.34e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01657 K03249 - gmx:100790913 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00905 07 10683695 10687153 Aip10g01657 10 36920985 36925112 ECH
Aip10g01657 10 36920985 36925112 Aip10g01657 10 36920985 36925112 ECH