Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01652 ATGAACCTGCTGTCAAACCATCACCGCCGCTGTGCTATGGAGCAGAGTGAGCCACGCCTGCGCTATTGGGGGTCTCACTGCTACCAGAGAAGGATTCTGGTCACCGCAGGTGTTGCTGTGAAGCTGCGCCTCTGTGTTTCTGAccgccggagctccgggctgagcttctgccacttgagaccctgcttccaccgtgttccaccgccgAGAGTACCAGATAATTTTCTGAGAAAATATGGGGGTGAGCTTTCCTCCTTTGTTAACCTATCTGTTCCCGAGGGTAGTTCGTGGCATGTGGGACTGAAAAAGGTAGACAACAAATTTTGGTTCATTGATGGTTGGGCAGAATTTGTTCAGCGCTATTCCATCGGTGTTGGATACCTTTTAGCTTTCAGATACGAAGGAAAGTTGAATTTCAGTGTTCACATTTTTAATTTGGCTACTGCTGAGATAAATTATCAATCACCCACACGAAGCAGCAATGAAGGATCTTACTTTGCGAATCGCCTCAAAATTTTTGAAGAAATGGAAGATGAAGACTTCACTGAATCCAAACCAGCCTTGCAGAATCTATTTAACGGGTCAAAACTTAATAGTGTAAACTGGGGTGAGGGTGGGAATGCTCTTCCTGCGAAAAGTGCCAGAGATATAGGTTTTCAATTTAATGCAATTGAGTTTAAAAAATCTACTGATGAACTGAAATTGTGTGCTTCTTTCGAGGAAAAGGCCAAAAAAACTGCAAGAAAGAAGCGAAAATCTAAACCTGGAAGTGCAAAAGGCCAGGAAGCTTCTGATGAACAAAAAGAGGAGAGAGAAATGCGCATTAGATTGTATGAAAGTGCTTCTGCAAGGAAAAGAACCGTGACGGCTGAGGAAAGAGAAAAGGTTGTCAACGAAGCAAAAGCATTTGAACCAAAATTTTATCTGATGCCATGA 936 0.3942 MNLLSNHHRRCAMEQSEPRLRYWGSHCYQRRILVTAGVAVKLRLCVSDRRSSGLSFCHLRPCFHRVPPPRVPDNFLRKYGGELSSFVNLSVPEGSSWHVGLKKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKLNFSVHIFNLATAEINYQSPTRSSNEGSYFANRLKIFEEMEDEDFTESKPALQNLFNGSKLNSVNWGEGGNALPAKSARDIGFQFNAIEFKKSTDELKLCASFEEKAKKTARKKRKSKPGSAKGQEASDEQKEEREMRIRLYESASARKRTVTAEEREKVVNEAKAFEPKFYLMP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01652 311 MobiDBLite consensus disorder prediction 245 293 - -
Aip10g01652 311 CDD B3_DNA 70 145 IPR003340 GO:0003677
Aip10g01652 311 ProSiteProfiles B3 DNA-binding domain profile. 71 147 IPR003340 GO:0003677
Aip10g01652 311 SMART B3_2 63 147 IPR003340 GO:0003677
Aip10g01652 311 MobiDBLite consensus disorder prediction 256 293 - -
Aip10g01652 311 SUPERFAMILY DNA-binding pseudobarrel domain 64 145 IPR015300 -
Aip10g01652 311 Pfam B3 DNA binding domain 71 145 IPR003340 GO:0003677
Aip10g01652 311 PANTHER B3 DOMAIN-CONTAINING 70 220 - -
Aip10g01652 311 PANTHER B3 DOMAIN-CONTAINING 260 306 - -
Aip10g01652 311 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 70 220 - -
Aip10g01652 311 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 260 306 - -
Aip10g01652 311 Gene3D - 56 147 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01652 Aip-Chr10 36305686 36310191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01652 70 305 B3 DNA Binding Superfamily AT3G18990 43.644 1.27e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g01652 B3 1.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01652 - - ahf:112785786 599.356