Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01587 ATGTCAGTACGCAAATCGGAATACCATCCGATTACTcttgcttcaagccgacaatctccCGCCTCCATCTTCAAACCCTACTTCGAGTTCACCGGCCGCCACTCCTCCTCCGCCACCACCGCCACCCCGGCCGAAGTGTCAAAGATCCAATCATTCCTTACTTCCTCATCCTCCGGCGCACTCTCATGCCTCATCTGCCTCGAACGCATCAAACCCTCAGACCCAACATGGTCCTGCTCCTCGCTCTGCTTCGCCCTCTTCCACCTCCATTGTATCCAATCATGGGCCCGCCAAGCCTCCAATCTCGCTGCCGCACGCGCCGCCACGCGCCTCCCTATCACAGAGCAGCGCGCCTCTGAAACCGCGCTCTGGAACTGCCCCAAATGCAGGGTAGAGTACCCAATCACGCACATTCCAAAAACCTACTTTTGCTTCTGCGGAAAACTCGAGAACCCTCCCAATGATCCATGGGTTTTGCCTCATTCTTGCGGTGAGATTTGTGGGAGGCCATTGAAGCACAACTGTGGTCACCATTGCCTTCTTTTATGCCACCCTGGACCCTGCCCGTCCTGCCCGAAACTCGTGAAAGTTAGTTGCTTTTGTACCAAAATTGAAGATGTGAGGAGGTGCGGGTTCAAGGAGTTCTCGTGTGGGAAAGTTTGTGGGAAGGTTCTGGATTGTGGGGTTCATGGTTGTGCTGAGATTTGTCATAAGGGTCAATGCCCTCCCTGCCGGGCACGCAGTGTGTACCAGTGCCGGTGTGGGAAGAAGAAGGAAGAAAGGGAGTGCTGTAACCGTGTTTTCAGGTGTGGCGAGCCTTGTGAGAAGAGGCTTGGATGTGGGAGGCATGTGTGTGAGAGAGGGTGCCATGTTGGGGAGTGTGGAGACTGCCCTTTGCAAGGGAAGAGGGCATGTCCTTGTGGGAAGAGAGTGTATGAAGGGATGCCTTGTGATGTTACCGTGCCCTTATGTGGGGCTACTTGTGATAAGATGCTTAGTTGTAGGTACCATAGGTGCCCCGAGAGGTGCCACCGTGGTGCATGTGTCGAGACTTGTAGGACTGTTGTGAAGAAGTCTTGTCGATGCGGCAGCCTCAGGAAAGATGTTCCTTGCTATCAAGATTTGTGGTGTGAAAGGAAGTGCCAGAGGATGCGGGACTGTGGCCGGCATGCTTGTAAACGCAAGTGCTGTGATGGGGATTGCCCTCCATGCTCAGAGGTCTGTGACAGGCGGCTTAGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGGGGTGCCTGTGCTCCTTGCCCAATAATGGTCACCATTTCATGTGCATGTGGGGAAACACATTTTGAGGTTCCTTGCGGTACTGAAATGGAACAAAAACCACCCAAGTGTCCTAAACCATGCCCTATTGCTCCTTTATGCCATCATGCACCAAAGCTCAAGCCACACAAATGCCATTATGGAGCCTGTCCTCCTTGTCGGCTTCCCTGTGCAGAAGAGTACTCTTGTGGCCATGCTTGCAAATTAAGGTGTCATGATGCTAAACCTCCGCCTAATCGGGAGTTCACTCTCAAACCAAAGAAAAAGAAAATTATACAACAAAGTGAGTGTACACCTGGCACTCCATGCCCTCCTTGCCCTGAATTAGTGTGGAGACCATGTGTCGGGCAACACATTGGAGCGGAGCGAATGATGGTCTGCTCTGATAAATCACAGTTTGCCTGTGAAAACTTATGTGGAAATCCTCTACCGTGCGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGGAGAATTCGGCCTCCACAAACCGGCTACAGAAAAGTGAGCCTTGTGAAGATTGTTCTCTTCCTTGTGATAAGGAAAGAGAACCTAAATGTCAGCATCGTTGCCCTCGTCGATGCCATCCTGGAGACTGCCCTCCATGCAAAGTGCTGATCAAGCGGTCTTGTCATTGTGGCTCAATGGTCCATGTGTTTGAGTGCATATATTACAACACCTTGTCAGCTAAGGATCAAGAGAAAGTCCGTTCATGTGGTGGGCTGTGTCATAGGAAGTTACCAAATTGTACCCATCTATGCCCCGAGACGTGCCATCCTGGTGAATGCCCAAATCCTGAGAAATGCAGTAAAAAGGTCACTGTTCGTTGCAAATGCCAAACACTGAAAAGGGAGTGGCCATGTCACGATGTTCAAGCAGCATATCACAGTGCTGGTTCCCACCCGAAGGATATTACCAAAAATCAATTTGGAATTGGCCTTATTCCTTGCAATTCTGATTGCAAGAGTAAAATGCAGGTTGTTGAGTCGGAATTACATCTACGGAAATCTCAAGTTACAGAGGTAAAAGAGACAGATAATGAAAAACTGGCTCCGAAGCGACGAAAAAGGCAGAAACGAGTACAAGAATCTAAGGAAGCAACAAAACTACAGAAAATTATTTCGACAACAAAGAAGCTCCTTCTGTACCTTTTTATTTTGATCATACTTGTTACTGCTACATATTATGGATACAAGGGACTTCTGTGGCTCAATGATTGGATGAATAAAGTTGATGAAAGAAGACAAAGACATCCTAGGATCAGATGA 2580 0.486 MSVRKSEYHPITLASSRQSPASIFKPYFEFTGRHSSSATTATPAEVSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCSSLCFALFHLHCIQSWARQASNLAAARAATRLPITEQRASETALWNCPKCRVEYPITHIPKTYFCFCGKLENPPNDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVSCFCTKIEDVRRCGFKEFSCGKVCGKVLDCGVHGCAEICHKGQCPPCRARSVYQCRCGKKKEERECCNRVFRCGEPCEKRLGCGRHVCERGCHVGECGDCPLQGKRACPCGKRVYEGMPCDVTVPLCGATCDKMLSCRYHRCPERCHRGACVETCRTVVKKSCRCGSLRKDVPCYQDLWCERKCQRMRDCGRHACKRKCCDGDCPPCSEVCDRRLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTEMEQKPPKCPKPCPIAPLCHHAPKLKPHKCHYGACPPCRLPCAEEYSCGHACKLRCHDAKPPPNREFTLKPKKKKIIQQSECTPGTPCPPCPELVWRPCVGQHIGAERMMVCSDKSQFACENLCGNPLPCGNHYCTKTCHALENSASTNRLQKSEPCEDCSLPCDKEREPKCQHRCPRRCHPGDCPPCKVLIKRSCHCGSMVHVFECIYYNTLSAKDQEKVRSCGGLCHRKLPNCTHLCPETCHPGECPNPEKCSKKVTVRCKCQTLKREWPCHDVQAAYHSAGSHPKDITKNQFGIGLIPCNSDCKSKMQVVESELHLRKSQVTEVKETDNEKLAPKRRKRQKRVQESKEATKLQKIISTTKKLLLYLFILIILVTATYYGYKGLLWLNDWMNKVDERRQRHPRIR 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01587 859 CDD NF-X1-zinc-finger 163 211 - -
Aip10g01587 859 CDD NF-X1-zinc-finger 404 452 - -
Aip10g01587 859 MobiDBLite consensus disorder prediction 779 800 - -
Aip10g01587 859 CDD NF-X1-zinc-finger 324 373 - -
Aip10g01587 859 ProSitePatterns Zinc finger PHD-type signature. 63 129 IPR019786 -
Aip10g01587 859 CDD NF-X1-zinc-finger 217 263 - -
Aip10g01587 859 CDD NF-X1-zinc-finger 270 317 - -
Aip10g01587 859 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 15 854 IPR034078 GO:0003700
Aip10g01587 859 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 15 854 - -
Aip10g01587 859 SUPERFAMILY RING/U-box 61 135 - -
Aip10g01587 859 SMART znfxneu3 687 708 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 SMART znfxneu3 624 642 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 SMART znfxneu3 387 406 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 SMART znfxneu3 500 545 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 SMART znfxneu3 280 299 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 SMART znfxneu3 227 246 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 SMART znfxneu3 471 492 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 SMART znfxneu3 334 354 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 SMART znfxneu3 175 193 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 SMART znfxneu3 582 614 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 SMART znfxneu3 414 433 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 CDD NF-X1-zinc-finger 612 653 - -
Aip10g01587 859 Pfam NF-X1 type zinc finger 414 432 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 Pfam NF-X1 type zinc finger 688 706 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 Pfam NF-X1 type zinc finger 227 245 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 Pfam NF-X1 type zinc finger 500 510 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 Pfam NF-X1 type zinc finger 582 592 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 Pfam NF-X1 type zinc finger 280 298 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 Pfam NF-X1 type zinc finger 175 192 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 Pfam NF-X1 type zinc finger 481 491 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 Pfam NF-X1 type zinc finger 336 353 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 Pfam NF-X1 type zinc finger 387 405 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 Pfam NF-X1 type zinc finger 625 641 IPR000967 GO:0005634|GO:0008270
Aip10g01587 859 CDD NF-X1-zinc-finger 377 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01587 Aip-Chr10 31913804 31923523 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Aip10g01587 zf-NF-X1 0.00024 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01587 K15683 - gmx:100799540 1476.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01587 10 31913804 31923523 Aip10g01587 10 31913804 31923523 ECH