Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01564 ATGAAGCTCTATTGTGAATACTTCTGTGCTAAAAATTTATGCAACAAGGATTCTTATACTTGCCAAGATTGCCAGAATAACGTAGAGCATAAGGAGCATGTGAATGAGACAAAGAAGGAAATAGAGTTGCTTGATCCACACACCTTTAAACCCAAGATTGTTGTTGACAACGTGGCCAGATACAGAAAAGGTTGCAACTGCAGTAAGTTAAAGTGCAAGAATAACTATTATGGTTGCTTCAGTTTTGGAGTTGGTTGCTCTCCTCTATGTTATTGTCTAAGTTGCAAAAATGAGTATGGAACCAAAGACTCCTCTCTTATCCTAGAGGTACAAAAACCTTCTAATGAGAATAATGGTTGCACTCTTGTCCCAAAGGAACAAGAACCAGTTAATGAGAACAACAACAGCAAGAACGAGCCGAAAAGAATGGATAATGGATCATCTTCTCAATCTCATCATCCAGTTGTCGACTACGGGGATTTCTTTACTTAG 492 0.3841 MKLYCEYFCAKNLCNKDSYTCQDCQNNVEHKEHVNETKKEIELLDPHTFKPKIVVDNVARYRKGCNCSKLKCKNNYYGCFSFGVGCSPLCYCLSCKNEYGTKDSSLILEVQKPSNENNGCTLVPKEQEPVNENNNSKNEPKRMDNGSSSQSHHPVVDYGDFFT 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01564 163 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 154 IPR044522 GO:0003700
Aip10g01564 163 ProSiteProfiles CRC domain profile. 1 100 IPR005172 -
Aip10g01564 163 Coils Coil 161 163 - -
Aip10g01564 163 MobiDBLite consensus disorder prediction 118 154 - -
Aip10g01564 163 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 63 98 IPR005172 -
Aip10g01564 163 SMART CXC_2 60 101 IPR033467 -
Aip10g01564 163 MobiDBLite consensus disorder prediction 118 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01564 Aip-Chr10 29862896 29863387 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01564 1 117 CPP Transcription Factor Family AT3G22780 37.879 1.89e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aip10g01564 TCR 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01564 - K21776 ahf:112771246 129.413