Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01562 ATGAAGCTCTATTGTGAATGCTTCCGTGCTGAAAATTTACACAACAAAGATTCTTGTACTTCCCAAGATTGCCAGAATAACGTAGAGCATAGAGAGCACGTGAATGAGACAATGAGGGAAATAGAGTCGCGTGATGCACACGCTTTTGAACCCAAGATTGTTGTTGACAACGTGACCAGATACAGAAAAGGTTGCAACTGCAACAAGTCAGAGTGCAAGAATAAGTATTATGATTGCTTTAGTTTTCGAGTTAGTTGCTCTCCTCTATGTCGTTGTCTGAGTTGCAGGAATGAGTATGGAACCAAAGACTCCTCTCTTGTCCCAAAGGAACAAGAACCTTCTAATGAGAACAATGGCTGTATTCTTGTCCTAAAAGAACAAGAGCCAGTTAATGAGAACAATGACGGCAAGAACAAGCCGAAAAGAATGGATAGTGGATCATCTCAATCTCGTCATCCAGTTGTCGGCTACGGAAATTTCTTTACTGAAGTTTGTACTGCTACTCAACTCGGTTAG 516 0.4128 MKLYCECFRAENLHNKDSCTSQDCQNNVEHREHVNETMREIESRDAHAFEPKIVVDNVTRYRKGCNCNKSECKNKYYDCFSFRVSCSPLCRCLSCRNEYGTKDSSLVPKEQEPSNENNGCILVLKEQEPVNENNDGKNKPKRMDSGSSQSRHPVVGYGNFFTEVCTATQLG 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01562 171 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 153 IPR044522 GO:0003700
Aip10g01562 171 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 63 98 IPR005172 -
Aip10g01562 171 MobiDBLite consensus disorder prediction 130 146 - -
Aip10g01562 171 MobiDBLite consensus disorder prediction 130 154 - -
Aip10g01562 171 SMART CXC_2 60 101 IPR033467 -
Aip10g01562 171 SMART CXC_2 1 30 IPR033467 -
Aip10g01562 171 ProSiteProfiles CRC domain profile. 1 100 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01562 Aip-Chr10 29849904 29850419 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01562 1 130 CPP Transcription Factor Family AT3G22760 37.931 2.08e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Aip10g01562 TCR 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01562 - K21776 ahf:112771246 120.553