Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01554 ATGGAAGGAAGGAAGAAAATTGAAATTTCCCGGAGGAGTGACATCTCTTTCTCAGGTAGCATTCTTGATTCTTTGTGTGGTTCAGATGCCGAAGATTCTGAGCCGAGAACATCGGAGATATCTCGGGATTCAAACTTGGGTTCCCTATCGGTTTCCAGGTCATTGGCTTACATGGAGCCAAAGTCTTCAAAAGACTTCATTGAAATTTGCATGAGTTCAGATGTCAAGCATGGGAGAGGTTCTACAAATTTAAGAAGTGATAAAATTGCTGATTCTCTAATTCATGGCAATTCTCATCTTGAAAAGGACACGGTTCACTCACTGAAAAAGTCAGTCTCTGCTAAGGTGGCTCACTTGTTGCTATCACCATCAGAAAACCCTTCACAAACACTGCCTCATGTCTCAGATTGTAATTCTCTTCATCGTCAATTTGGTGGTGAGTTTCATTCATGGCCGGCACCGGTCGAAGTGGTGGCCGGAGACAGAGCTGCTAGTGCTTCCAAGAGCCACAGTCAGGCCGAGAAGCGGCGCAGGGACCGGATCAATGCACAGCTTACAAGTCTAAGGAAACTAATTCCAAAATCTGATAAGATGGACAAGGCAGCTTTACTAGGAAGTGTGATAGAGCAAGTGAAGGATCTAAAGAGAAAAGCAATTGAAGTTAGCAAAGCCGTAACCGTTCCAACTGAATCCGACGAAATAACAATCGAATATGATCCGAGTGCGCGCGACGAGAGCCTAAAGATCAAGAACAAAGTTGTGATCAAGGCATCTGTTTGCTGCGACGATCGGCCGGAGCTGTTCTCGGAACTAATCCAAGTCCTAAAAGGATTAAGGCTCACGGCAGTTAGAGCTGACATAGCAAGTGTTGGGGGAAGAATCAAAGGCACATTTTTGCTTTGTTCTAAGGATAGTGAAAAGGGTGTTTGCCTTGGTACTCTCAAGCATTCACTTAAATCAGTTGTGACAAAAATTGCTTCATCTTCCATTGCAACAAATTGGCCTACTAGAAgatcagtgggtaaaggtagtgtgtatgtgaatgttgatgcttgttga 1059 0.4212 MEGRKKIEISRRSDISFSGSILDSLCGSDAEDSEPRTSEISRDSNLGSLSVSRSLAYMEPKSSKDFIEICMSSDVKHGRGSTNLRSDKIADSLIHGNSHLEKDTVHSLKKSVSAKVAHLLLSPSENPSQTLPHVSDCNSLHRQFGGEFHSWPAPVEVVAGDRAASASKSHSQAEKRRRDRINAQLTSLRKLIPKSDKMDKAALLGSVIEQVKDLKRKAIEVSKAVTVPTESDEITIEYDPSARDESLKIKNKVVIKASVCCDDRPELFSELIQVLKGLRLTAVRADIASVGGRIKGTFLLCSKDSEKGVCLGTLKHSLKSVVTKIASSSIATNWPTRRSVGKGSVYVNVDAC 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01554 352 Pfam Helix-loop-helix DNA-binding domain 168 214 IPR011598 GO:0046983
Aip10g01554 352 PANTHER TRANSCRIPTION FACTOR BHLH51 138 333 - -
Aip10g01554 352 Gene3D - 160 223 IPR036638 GO:0046983
Aip10g01554 352 PANTHER TRANSCRIPTION FACTOR BHLH30 138 333 IPR045847 GO:0003700|GO:0006355
Aip10g01554 352 CDD bHLH_AtAIG1_like 161 236 - -
Aip10g01554 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 217 IPR036638 GO:0046983
Aip10g01554 352 SMART finulus 171 220 IPR011598 GO:0046983
Aip10g01554 352 MobiDBLite consensus disorder prediction 26 45 - -
Aip10g01554 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Aip10g01554 352 CDD ACT_UUR-ACR-like 258 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01554 Aip-Chr10 29485551 29489635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01554 144 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 47.312 4.53e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip10g01554 HLH 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01554 - - adu:107469423 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01554 10 29485551 29489635 Aip10g01554 10 29485551 29489635 ECH
Aip10g01554 10 29485551 29489635 Aip07g00831 07 9272500 9274395 PCT