Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01542 ATGGAAGAGGAAGATGTAGTCTCCTATTTTCATGGTGCAGCAGCTATGGCCGACGAAAATTTGTGTGTCGGCAACGAAGAAGAACTAGTTTTCGATGACCTAGATGCTTGTCTAGGTAATGAATCTTCATCCGAGGCGGGTGAGGATGCAAATATGGAGGGATATTTTGACGATAATGTTGGTGATGATTTTTACGAAAACTGGGAAGACAGAGGCATTGACGAGATTGCTGACTTTGGCCAAATTAACTTTAAAGAAATAACTTTTGATCATATGAGATTGTTACATTTTCCTGATCAACATGTGACACAACAGCAGTTTGTTTGCTTTAAGCAAGGGTTCAGAGATTTTGCTGTTGATAAAGAGGCCCACGAACATAAGCGAGAGCCTAAGCCTGAGACTAGATGTGGCTGTCTAGCACAGATGCGTGTTCATCTACATTTGGAGAGTGGTAGATGCATTATTTCATACTTTGATGATGTTCACAATCATGAGATGCTTGATGAAACACTTACATTTATGCTCCCTAGGAATAGAAAGATGAATGCTACCGCAATTGAACAAATGAACATGATGTTAAAAGTTGGGATTAAAACACCACAGATATAA 609 0.3941 MEEEDVVSYFHGAAAMADENLCVGNEEELVFDDLDACLGNESSSEAGEDANMEGYFDDNVGDDFYENWEDRGIDEIADFGQINFKEITFDHMRLLHFPDQHVTQQQFVCFKQGFRDFAVDKEAHEHKREPKPETRCGCLAQMRVHLHLESGRCIISYFDDVHNHEMLDETLTFMLPRNRKMNATAIEQMNMMLKVGIKTPQI 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01542 202 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 99 193 - -
Aip10g01542 202 Pfam FAR1 DNA-binding domain 99 167 IPR004330 -
Aip10g01542 202 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 99 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01542 Aip-Chr10 28944928 28945623 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip10g01542 FAR1 1e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01542 - - ahf:112785710 411.379