Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01535 ATGGATGGTTCCACTAAGTCTCTGCTAGTTTCATTGGTTAACATTGCTAATGAAGTTAGTTCAATGGAGAAGTCTCACTTTGTTCATGCAAGGAATGTTTCATCCATGATATGGAGGATCAAGCTTCTCTCTTCTATGCTTGAAGAGATTCAATTAACATGCTGTCCAATTTCTCCATCTTCCATAAGGTCTTTCAATGAGATCTTGTCTTTGATTGTGAAATCAAAGCATTTGATTCAAGAATGCAAGGATGGCAGCTATCTTTGGAGTCTAATACAGTTGGAGTTCATATCCAACCAATTTTACTTGCTGGCAAAGGATATGGGAAATTCCCTTGACACACTTCCTCTGAGTTTGCTTAGCATCACAAGAGATACACAAGAACAAGTGGAGCTTCTCCACAAACAAGCAAAAAGGGTTGAGTTGTTCATTGATCCTCGCGATCTTCAACAAAGAGACCGGCTTCTGCATGTGATGGCCAACAACAGTTTACAAAACAAGGACTTTGTTGATGCTGGAAAAGTGGAGGAAATATTAAGCAACATTGGTTTCAAAACTGCATCGGATTATGATAGGGAAATATCGAAACTAGAGGCTGAAATTCGGAATCAGGCTAGCACCGGAGGACTAAAGGAAGCGTCTGATATCAAGAATCTGTTATTTCTGGTTTCATATTCCAAATCATTGATATTCAAGGATGTAGAGAATGAAAGAAACGAAGGAGAGTGCCAGCCACTGCCTGAATTTCAACATATCAAAATTCATGATTATTGTTCAGCAAGTTCCAAGTCCATAACACTAAATATTCGTGACGAATTTCTTTGCCCGATTTCGCTTGAACTAATGAGGGATCCTGTGATTGTATCTTCCGGCCACAGCTATGATCGAGTTTCGATAGCACGGTGGATAAACTCCGGGCATCACACTTGCCCCAAAAGTGGACAAAGGTTAATTCACACTGCTCTGGTACCAAACTATGCATTGAAGAGTCTTATCCAGCAATGGTGCTATGAAAACAAGCTCCCAGTGAACGACCCTAATATGTCTGTTTTGAAGGTAAATAGCAGCAAGAAGAACTTCAATGCGAATTCTTTAGATGCGATCAAAATGACAGCAGAGTTTTTAGTTGGAAAATTGGCAACTGGCTCGGCCGACACCCAAAGGAAAGCCGCTTATAAACTCCGGTTACTGGCAAAATGCGGCATGGACACTCAAAAAATTATAGCCGAGGCCGGGGCTATTCCATTTCTAGTTACACTACTACTTTCCAATGATCCAAGAATCCAGGAACAAGCGGTGACGGCTTTGTTAAACCTCTCCATCTTTGACAACAACAAGATTCTGATAATGGCAGCCGGCGAAGCAGTCGAAAACATAATAGAAGTACTTGAATCTGGGAAGACAATGGAGGCAAGAGAAAATGCGGCAGCAGCAATATTCAGCTTGACTATGATAGATTACAGCAAAGTAACAATTGGAGCTCATCCAAGAGCCACAAAGGCATTAGTTAAGCTCTTGAAAGAAGGCACACCTGTAGGTAAAAGAGATGCTGCTACTGCGCTTTTCAACCTGGCAGTTTACCAAAATAACAAGGCGACAATTGTGAGTGCAGGGGCAGTTTCTTTGCTGATTGAGTTGCTGATGGATGATAAGGCGGGTATCACTGATGATGCATTGGCTGTGCTTGCTTCTCTTGTTGGTTGCTCTCAAGGGCTACAAGAGATAAGGAACAGCAGAGCATTGGTTTCTATCCTTATTGAGCTTCTGAGGTATGGATCAGCCACAGGGAAGGAAAACTCAATAACACTTCTTCTCGGGTTGTGCAAAGAAGAAGGCGAGCTCGTGGCGAGACGTCTCTTAGTGAATCCCAGCAGCATTCCTTCTCTTCAAAGTTTGGCTGCTCATGGCTCGTCGAGGGCACGTCGAAAGGCTGATGCATTGCTTCGCTTGCTAAATAGATGCTGCTCACAACCTCATCATTCTCTTTGA 1989 0.4253 MDGSTKSLLVSLVNIANEVSSMEKSHFVHARNVSSMIWRIKLLSSMLEEIQLTCCPISPSSIRSFNEILSLIVKSKHLIQECKDGSYLWSLIQLEFISNQFYLLAKDMGNSLDTLPLSLLSITRDTQEQVELLHKQAKRVELFIDPRDLQQRDRLLHVMANNSLQNKDFVDAGKVEEILSNIGFKTASDYDREISKLEAEIRNQASTGGLKEASDIKNLLFLVSYSKSLIFKDVENERNEGECQPLPEFQHIKIHDYCSASSKSITLNIRDEFLCPISLELMRDPVIVSSGHSYDRVSIARWINSGHHTCPKSGQRLIHTALVPNYALKSLIQQWCYENKLPVNDPNMSVLKVNSSKKNFNANSLDAIKMTAEFLVGKLATGSADTQRKAAYKLRLLAKCGMDTQKIIAEAGAIPFLVTLLLSNDPRIQEQAVTALLNLSIFDNNKILIMAAGEAVENIIEVLESGKTMEARENAAAAIFSLTMIDYSKVTIGAHPRATKALVKLLKEGTPVGKRDAATALFNLAVYQNNKATIVSAGAVSLLIELLMDDKAGITDDALAVLASLVGCSQGLQEIRNSRALVSILIELLRYGSATGKENSITLLLGLCKEEGELVARRLLVNPSSIPSLQSLAAHGSSRARRKADALLRLLNRCCSQPHHSL 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01535 662 SUPERFAMILY RING/U-box 257 343 - -
Aip10g01535 662 SUPERFAMILY ARM repeat 373 651 IPR016024 -
Aip10g01535 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 343 IPR013083 -
Aip10g01535 662 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 8 659 - -
Aip10g01535 662 SMART arm_5 486 526 IPR000225 GO:0005515
Aip10g01535 662 SMART arm_5 527 567 IPR000225 GO:0005515
Aip10g01535 662 SMART arm_5 568 609 IPR000225 GO:0005515
Aip10g01535 662 SMART arm_5 401 441 IPR000225 GO:0005515
Aip10g01535 662 Coils Coil 187 207 - -
Aip10g01535 662 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Aip10g01535 662 Pfam Armadillo/beta-catenin-like repeat 407 440 IPR000225 GO:0005515
Aip10g01535 662 Gene3D - 355 490 IPR011989 -
Aip10g01535 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Aip10g01535 662 Gene3D - 491 654 IPR011989 -
Aip10g01535 662 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Aip10g01535 662 PANTHER U BOX DOMAIN-CONTAINING 8 659 - -
Aip10g01535 662 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Aip10g01535 662 CDD RING-Ubox_PUB 273 315 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01535 Aip-Chr10 28640554 28642542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01535 1 657 U-box Gene Family AT3G46510 38.195 5.47e-119 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01535 - - gmx:100793498 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01535 10 28640554 28642542 Aip10g01535 10 28640554 28642542 ECH