Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01485 ATGGAATTCGAACTCCCAAACAAGGCCTTAACCACCATGCGCTTTTCGGAGCTGAATCCGCCGCTATCAGAGAAGGTTCTCGAAGCCTTATCGGAATCTGGGTTCAACTTCTGCACGCCGGTTCAAGCCGCCACCATTCCCTTGCTCTGCAGCTTCAAGGATGTCGCTGTCGATGCCGCCACTGGTTCAGGCAAAACCTTAGCTTTTGTCATCCCTCTTGTTGAGATTCTTCGACGCTCCTCTTCTAACCCCAAGCCTCATCAGGTACTAGGAATAATCATATCCCCTACAAGGGAGCTATCACATCAAATATATCATGTTGCACAACCTTTCATTTCAACTTTAGCGAATGTTAAGTCCATGCTGCTTGTTGGTGGAGTTGAAGTGAAATCAGACATGAAGAAGATAGAGGAAGAAGGCGCTAACATACTAATTGGCACACCTGGGCGGTTGTATGACATAATGAACCGGATGGATTTCTTGGATTTCAAAAACTTCGAGATTTTGATTTTAGACGAGGCTGATAGACTTTTAGATATGGGATTCCAGAAGCAGATAACTTCCATTATATCTCTTTTGCCTAAGCTTCGAAGAACTGGCCTGTTTTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTGCTAGAGCAGGATTAAGAAATCCTGTGAGGGTTGAAGTTCGGGCAGAGGCGAAACTTTTAAATGCTCCTGCAGCATCAAAACAACCTGAATCTACAAAAACACCTTCTGGGCTTCAAATTGAGTACTTGGAATGTGAGGCAGATAAGAAGCCATCACAGCTAGTAGACATCCTTATTAAGAATCGCTCAAGAAAAGTTATAATATATTTCATGACTTGTGCTTGCGTTGACTATTGGGGAGTTGTCCTTCCACGCCTTTCTGTTTTGAAAGGCTTCTCCTTGGTTCCTCTTCATGGAAAGATGAAGCAGACTGTTAGGGAGAAAGCATTAGCCTCCTTTACATCCCTTTCAAATGGAGTTCTGCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCAGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACACAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCAGTTGTCTTCTTATTGCCAAAGGAGGAGTCTTACGTAGAATTCCTACGTATAAGAAGAGTCCCTCTTCAAGAGAGAAAATGCTCTGATAATGCACCTGATGTTGTACCTCAGATTCGTTCTGCTGCGAAAAAAGATCGTGATGTTATGGAGAAAGGAGTCAGGGCATTTGTTTCCTACATCCGTGCGTACAAGGAGCATCACTGTTCATATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAATTGGCCATGGGACATGGCTTATTGCAACTTCCTCTAATGCCAGAGGTAAAACATCACTCACTTTCTACTGAGGGATTTGTACCAGTTGATGATATCAATTTGGAGGACATTAAATACAGAGATAAATCTCGTGAAAAACAAAGGAAGAAAAACCTGCAAGCAAAGAAAGAAGCGAAAGAGAAGGAGAAAGAGGCAAAACCAGAAAAGCCAAGCAAAACTCCCAGTGCACCTACTGCCATGAGGAAGAAAACAGCCCGACAGAGACGTGCTCAGCAGACAATTGAAGATGAGGAAGAGTTGATGCAAGATTACCGCTTGTTGAAGAAACTGAAGAAAGGGACTATAGATGAGAATGAATATGCTAAGTTGACAGGCGCTGAGGAATTACTCTGA 1776 0.4307 MEFELPNKALTTMRFSELNPPLSEKVLEALSESGFNFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRSSSNPKPHQVLGIIISPTRELSHQIYHVAQPFISTLANVKSMLLVGGVEVKSDMKKIEEEGANILIGTPGRLYDIMNRMDFLDFKNFEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAVEELARAGLRNPVRVEVRAEAKLLNAPAASKQPESTKTPSGLQIEYLECEADKKPSQLVDILIKNRSRKVIIYFMTCACVDYWGVVLPRLSVLKGFSLVPLHGKMKQTVREKALASFTSLSNGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERKCSDNAPDVVPQIRSAAKKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGHGLLQLPLMPEVKHHSLSTEGFVPVDDINLEDIKYRDKSREKQRKKNLQAKKEAKEKEKEAKPEKPSKTPSAPTAMRKKTARQRRAQQTIEDEEELMQDYRLLKKLKKGTIDENEYAKLTGAEELL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01485 591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Aip10g01485 591 Coils Coil 503 525 - -
Aip10g01485 591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Aip10g01485 591 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Aip10g01485 591 MobiDBLite consensus disorder prediction 502 560 - -
Aip10g01485 591 Gene3D - 4 227 IPR027417 -
Aip10g01485 591 CDD SF2_C_DEAD 251 384 - -
Aip10g01485 591 MobiDBLite consensus disorder prediction 502 531 - -
Aip10g01485 591 SMART DUF4217_3 413 476 IPR025313 -
Aip10g01485 591 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Aip10g01485 591 Coils Coil 541 568 - -
Aip10g01485 591 CDD DEADc_DDX55 26 224 - -
Aip10g01485 591 Pfam Domain of unknown function (DUF4217) 416 473 IPR025313 -
Aip10g01485 591 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 23 588 - -
Aip10g01485 591 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Aip10g01485 591 SMART ultradead3 34 254 IPR014001 -
Aip10g01485 591 Gene3D - 252 479 IPR027417 -
Aip10g01485 591 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Aip10g01485 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Aip10g01485 591 SMART helicmild6 290 375 IPR001650 -
Aip10g01485 591 PANTHER RNA HELICASE 23 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01485 Aip-Chr10 26482719 26487449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01485 22 389 Eukaryotic Initiation Factors Gene Family AT3G13920 30.623 3.26e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01485 K14809 - gmx:100801482 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01485 10 26482719 26487449 Aip10g01485 10 26482719 26487449 ECH