Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01467 ATGATCATATATTTTAAGGAAAACCAACGTTTGGTTTTGAAGAGAGGCCCCACTTTAGACATTCGGATAAAGTCAAGAAAAGCCACTTCATCAGATTGTTCTTCTTTTCTACGGTCTGGTGTTGATATATGTGTTCTTTCAACTCCACAATGCACTGCTAATAATAATAATGATCCTGTGTGGATTGATGGTAGAATAAATTCCATAAAGAGAAACCCCCATGGTTCTGATTGTTCATGTCAATATTATGTCAACTTCTATCTTAACCAAGGTTCATTTGGTACACAAAGAACACTTAACAAGGAAGTTGAAGTAATTGCATTGAATCAAATTTCAATCCTCCAGAAGATTGACCATAATAGTTTCTCTAAAGATAACTCTTCTAGGTGGGATTCATCAATGGACTGCTCCTCAGTACCCCAAAGTAAATTACTCTTGGGGAAATTCTTATCGGATATTTCATGGCTGGTTATTGCATCTTTTTTAAAGAAGGCTAAATTTGATGTAAGATCTGTGGATAACAAGATTGTGTATCAAGTTTTGGGAGGTAGTAATGCTAATGATTCTTACATAGATGTTGTGAATTTCAAAGTAGATGATGATGGCATTGTGCAATCCATGGTCTCTCAAATTGATACACATGATGCTATTAAAAGAATTGGTCATAAAAGATGTTATGATTATTACCCTGAAGATGAGAAAGCAGATCCATCCTGTAATGTTGAGGGATTAAGGCGTTCGAAGCGAAGGCATGTACAACCGGACCGGTACCTTGGTTGTGAGGTTCCTGTGATGGATGTTAGTACTCTTAGAACCTGGCCTCCCAAGATGAGTGTATCGAAAGATGAAGGCAAAGACGAAGACAAAGAAGAAGAGCCTGTTCCATTAGCATGGGAGCCTTGCTTCCAAGAAAAGTGTAATAAACAAGATGTTAACAGTGGCAAGAAAATTGTAACGTACCAAAGAAGGAAGAAAAGAATGGAAGGGAAGTTAGGTGATGCAGATCAAGATGGAATTCAACCTCCAATTTTTGTTCTTCCTCCTCCCAAGAAAGATGAACCAATTCCACTTCCCCAGAACCGTTATAATCTCAGAGACAGGCAAAACACGCAAAAAACCGAGAAAAGAAACCACCATTCAAGTTCAACAACATATACAAAAAGTAGTAGGAATCTTGATGATGAAGAGAGACCTTACAAAGACAGAACCTTAAACGCAGTTTCATACAAGGAAGTCATAGATTCATATCTGAGGCAAATTGAAGAGGTTTCTAATGTTGAAAAAGAGCAACCAAGTATAAGGGAGCAGTGGATGGCTACAACAAGAGAATGTGAACAAAAGAATGAGATGGGAAAATCTCAAGTGGAGGAAGAAGAAATTTCTGAAACGGCTATGTTGTGGAGAGAAATGGAAATGTCAATGGCATCAAGTCATCTTGATTCAAGTTCAGATGCAGTTCTTGCTGAAACTATAGGAAACTGCAACAAAGTTTGCCAACATGATTATAGATCGGATGATGAAATTGGAATTTACTGCATTAGATGCGGTGTTGTTAGGGTCGACATCAAAGACGTCGCAACAGAATTTTTGCCACAGAAAACAAGGCACAGGCAAGAGGAGAATCAACGGAGTGATTCAGAGAAGCTGGAGGCTGAGGAAGACGCCGGGGACACCAAGTTTTTCTCAACCGTTGATGCTTCTAGAGATGAACCTATGAATGAAGAAAATGGCAATGTTTGGGAACTAGTTCCAGATTTGAAAGTAAAAATGCATGTCCACCAAAGAAAAGCATTTGAGTTTCTTTGGCGAAACATTGCAGGGTCAATGGAACCATTACAAATGGAGTCACAATCCAAAAGCATTGGTGGTTGTGTGATATCTCATTCTCCGGGAGCTGGAAAAACCTTCCTCATAATCGCGTTTCTTGTCAGTTATCTGAAGCTTTTCCCAGGGAAAAGGCCACTGATTCTTGCTCCAAAAACTACACTCTACACATGGTACAAGGAGTTCATCAAATGGGAGATTCCTTTACCGATTTATATTATCCATGGCCGCTCGTCGCAGAAGAAGTTCAAGGAGAATACCGTGTCCATTCCTGGCATTCCAAAGCCAACGAATGATGTAAAGCATGTTCTTGACTGTCTAACAAAGATTCACAAATGGCATGAGCATCCCAGTGTCCTAATCATGGGCTATACTTCGTTTCTTTCGCATATGCGCGAAGATTCCAGATTCTCTCACGGAAAGTATATGGCAAAAGTCTTGAGAGAAAGACCTGGGATCTTGGTTCTCGACGAAGGGCACAATCCTCGAAGCACGAAATCGAGGTTGAGGAAAGTTTTGATGAAGGTAAATACAGAGCTCAGAGTTTTGCTCTCTGGAACCTTGTTTCAGAACAATTTCTGCGAGTTTTTCAACACGTTGTGCTTGGCCAGGCCCAAGTTTGTTCACGAAGCTTTATCAGAGTTAGATGGTAAATACCGGACGAATCAAAAGATTGCTGAGAAAGCAAGACATTTGCTCGAGGCACGGGCGAGGAAATTCTTCCTGGACCAGATTGCCAAGAGAATAAACTCGAGCGATGACGAAGACACGGAACAGGGTCTGAATTTGTTGAAGAAACTAACAAATGAATTCATTGATGTGTATGATGTTGGCAACTCTAATATTACTATGCCTGGTTTACAGATCTATACATTGGTGATGAACACAACTGATATACAGTTCAAGATTCTGTTTGAACTGCACCAGAAAATGGGTGAGTGCCATGGTTACCCTCTGGAGTTAGAGCTTCTTATAACACTTGGATCAATCCATCCATGGCTGGTGAAAACGGTGGCGTGCGTAGCTAAGTTCTTGAGTGTGGAGCGATTGAGGGAGTTAGATGAAGTCAGGAATGATTTAAAGAAAGGCTCTAAGGTGAGATTTGTTCTTAGCCTCATAAGCCGCGTTTTCGCGAAGGAGAAGATCTTGATCTTCTGCCACAACATTGCACCAGTGAAGCTGCTTGTGGAATTGTTTGAGAGAGTTTTTAATTGGAGAAAAGACAGAGAGATCTTGGTACTCAACGGGGAACTTGAACTGTTCGAACGCGGGAAAGTCATCGATAAGTTCGAGGATCCTCATGGTGTTTCGAGGGTGCTTCTTGCCTCAATCACGGCCTGCGGAGAAGGGATTAGTCTAACTGCGGCTTCTAGAGTGATCATGTTGGATTCGGAATGGAATCCTTCCAAGACGAAGCAAGCGATTGCGAGGGCTTTCAGACCAGGGCAGCAGAAAACGGTTTATGTGTATCAGTTACTAACTTCAGATTCATTGGAGGTAGATAAGCATAGGAGAAACAAATGGAAAGAGCGGGTTTCTTGCATGATATTCCACGAGGAATCTGCGGAGGCTCCTTCGCAGTGGCTAGCCGAGAATATTGAGGATGATGTGCTTAGAGATATGGTTGAGGAGGACAAGTCTAAATCATTCCATATGATCATAAAGAATGACAAGTATTCAGCAACAATTGATGGTTAA 3522 0.4103 MIIYFKENQRLVLKRGPTLDIRIKSRKATSSDCSSFLRSGVDICVLSTPQCTANNNNDPVWIDGRINSIKRNPHGSDCSCQYYVNFYLNQGSFGTQRTLNKEVEVIALNQISILQKIDHNSFSKDNSSRWDSSMDCSSVPQSKLLLGKFLSDISWLVIASFLKKAKFDVRSVDNKIVYQVLGGSNANDSYIDVVNFKVDDDGIVQSMVSQIDTHDAIKRIGHKRCYDYYPEDEKADPSCNVEGLRRSKRRHVQPDRYLGCEVPVMDVSTLRTWPPKMSVSKDEGKDEDKEEEPVPLAWEPCFQEKCNKQDVNSGKKIVTYQRRKKRMEGKLGDADQDGIQPPIFVLPPPKKDEPIPLPQNRYNLRDRQNTQKTEKRNHHSSSTTYTKSSRNLDDEERPYKDRTLNAVSYKEVIDSYLRQIEEVSNVEKEQPSIREQWMATTRECEQKNEMGKSQVEEEEISETAMLWREMEMSMASSHLDSSSDAVLAETIGNCNKVCQHDYRSDDEIGIYCIRCGVVRVDIKDVATEFLPQKTRHRQEENQRSDSEKLEAEEDAGDTKFFSTVDASRDEPMNEENGNVWELVPDLKVKMHVHQRKAFEFLWRNIAGSMEPLQMESQSKSIGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLILAPKTTLYTWYKEFIKWEIPLPIYIIHGRSSQKKFKENTVSIPGIPKPTNDVKHVLDCLTKIHKWHEHPSVLIMGYTSFLSHMREDSRFSHGKYMAKVLRERPGILVLDEGHNPRSTKSRLRKVLMKVNTELRVLLSGTLFQNNFCEFFNTLCLARPKFVHEALSELDGKYRTNQKIAEKARHLLEARARKFFLDQIAKRINSSDDEDTEQGLNLLKKLTNEFIDVYDVGNSNITMPGLQIYTLVMNTTDIQFKILFELHQKMGECHGYPLELELLITLGSIHPWLVKTVACVAKFLSVERLRELDEVRNDLKKGSKVRFVLSLISRVFAKEKILIFCHNIAPVKLLVELFERVFNWRKDREILVLNGELELFERGKVIDKFEDPHGVSRVLLASITACGEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKTVYVYQLLTSDSLEVDKHRRNKWKERVSCMIFHEESAEAPSQWLAENIEDDVLRDMVEEDKSKSFHMIIKNDKYSATIDG 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01467 1173 MobiDBLite consensus disorder prediction 323 399 - -
Aip10g01467 1173 Pfam SNF2-related domain 592 850 IPR000330 GO:0005524|GO:0140658
Aip10g01467 1173 SMART helicmild6 1005 1090 IPR001650 -
Aip10g01467 1173 CDD DEXHc_ATRX-like 590 818 - -
Aip10g01467 1173 MobiDBLite consensus disorder prediction 367 381 - -
Aip10g01467 1173 Pfam Helicase conserved C-terminal domain 973 1089 IPR001650 -
Aip10g01467 1173 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 1167 IPR044567 GO:0080188
Aip10g01467 1173 Gene3D - 561 857 IPR038718 -
Aip10g01467 1173 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 2 1167 - -
Aip10g01467 1173 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 976 1131 IPR001650 -
Aip10g01467 1173 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 615 814 IPR014001 -
Aip10g01467 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 758 1128 IPR027417 -
Aip10g01467 1173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 576 816 IPR027417 -
Aip10g01467 1173 MobiDBLite consensus disorder prediction 275 296 - -
Aip10g01467 1173 CDD SF2_C_SNF 972 1101 - -
Aip10g01467 1173 MobiDBLite consensus disorder prediction 278 295 - -
Aip10g01467 1173 MobiDBLite consensus disorder prediction 533 555 - -
Aip10g01467 1173 SMART ultradead3 586 828 IPR014001 -
Aip10g01467 1173 Gene3D - 949 1164 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01467 Aip-Chr10 26021117 26026600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01467 961 1120 RAD5 or RAD16-like Gene Family AT5G43530 32.927 7.13e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip10g01467 SNF2_N 1.4e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01467 K10875 - jre:108991882 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01467 10 26021117 26026600 Aip10g01467 10 26021117 26026600 ECH
Aip10g01467 10 26021117 26026600 Aip07g00797 07 8685301 8691693 PCT