Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01396 ATGGTTTCTAGAGAGCAAAAGAGAGCAGCACTATTGCACGAGAAGCTGCAACTTCTTCGTTCCATTACTAACTCTCATGCTCTTAACAAGACGTCGATTATAATCGATGCATCAAAGTACATCAGAGATCTAAAGCAAAAAGTAGAAAGACTCAATCAAGACATGGCGGCTGCACAAACATCCACTCACCAAAATCCTTTGCCTATGGTAAAAGTAGAAACCCTAGAGAAGGGGTTTCTTGTAAACGTGGTGTCAGCAAAGAGTTGTCCAGGTCTTCTTGTTTCCATATTGGAGGTGTTTGAAGAGATGGGTCTCACTGTTATGGAAGCTAGGGTTTCTTGCACAGACACTTTTCGCTTTCAAGCTGTTGGAGGAGAAAATGAAGGGGATGGTGAGAGTATTATTGATGCACAAGCTGTGAAACTAGCAGTGGGGCAAGCAATCAAGAATTGGAGCCAACAAAGTACTGATGATGATGATGATGATGATGATCAACAGTGA 501 0.4212 MVSREQKRAALLHEKLQLLRSITNSHALNKTSIIIDASKYIRDLKQKVERLNQDMAAAQTSTHQNPLPMVKVETLEKGFLVNVVSAKSCPGLLVSILEVFEEMGLTVMEARVSCTDTFRFQAVGGENEGDGESIIDAQAVKLAVGQAIKNWSQQSTDDDDDDDDQQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01396 166 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 157 - -
Aip10g01396 166 Gene3D - 2 67 IPR036638 GO:0046983
Aip10g01396 166 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 66 IPR036638 GO:0046983
Aip10g01396 166 CDD ACT_UUR-ACR-like 90 148 - -
Aip10g01396 166 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 157 - -
Aip10g01396 166 Coils Coil 34 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01396 Aip-Chr10 23749632 23752410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01396 5 144 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.289 2.66e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01396 - - tcc:18600910 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01301 07 20930371 20931604 Aip10g01396 10 23749632 23752410 ECH
Aip04g02390 04 108732574 108740780 Aip10g01396 10 23749632 23752410 ECH
Aip02g02454 02 98198781 98201257 Aip10g01396 10 23749632 23752410 ECH
Aip01g00293 01 3123992 3127293 Aip10g01396 10 23749632 23752410 ECH
Aip10g01396 10 23749632 23752410 Aip10g01396 10 23749632 23752410 ECH
Aip10g01396 10 23749632 23752410 Aip07g00773 07 8424007 8426298 PCT