Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01391 ATGTACGGTCAGGTTAAAGGATTGGGTAGGTCTAAACTGGGGAGAAAGTTATTTGGAGTGGAGGTCGTTCGTCACCGGTGGTGGGTGGAGCTCGTCGCGGCAGGGCGTGAGGCTCTGAAGGTCAGTCGCTGTCTGCCTGCTGTTGCTTTCCCGGAAGCTCCAGCATACAAAACCAGCAACCGGTCCGTGGTGTGGTGGTCGTTGTTGTCACTTTGCTTATCCGATCAGTTAAGTTCTCAGCTACCATCGCCGTCGGTAGTCATCCGGGCAACTGGTAGCATAATGTTTGTCTTCTTATTTCAGGACACAATGTATGATACCAGAGTGGAGGAAGATGCTGAGTCATCCGATTGGGAAGGTAGGGGGGCTTCAATGTTGCCCGTTTTTTTGGGTTTGGATGGGTTGCGAGCAGAAGATGTTCTTGAAATGAAGTTTTCTTCACCTCAGGAGGCAGGCGGCTTCTATAACAATTACAGCCGACTAAAGGGCTTTGCATCACGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATCGTGCGGTACAGTTTTGTTTGTAATAGGCAAGGATTTAGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGGTCGTTACCCGATGCGGATGCATGGCGGAGATGAGGATAAAGAGGAAAGACGGTAGTGGGAGGTGGTATGTTTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCGTATGGGAAGCTTGTTGGTTATCTGCGGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGGGAGATTGGGATTAGCATACCTAAGATTTATGAGTCTTTCGCAGCACAACTGGGGGGCTTTAATTTGGTAACATTCACAAAGCAAGATATGTATAATGAGATACGGAAACAGAGAGGTCTGCAAGGCGGAGATGTAAGTGCGGCTATTAGCGACGATCGTTGCCAGGAAGATTATGGGATTTTCGGCGATGTGCTAGCATTCGACGCTACGTATGGCCGCAACAAGTACAACCTACCCGTTGTAGTCTTTTCCGGAGTAAACCACCACAACCAGACATGCGTATTTGGAACAGCAATGGTCTCATGCGAATCGCAGGAGTCATATATTTGGGTTCTTCGCCAGTTTCTGGAATGCATGCAAGGTAAGGCACCGCAATCGGTCATCACGGATGGCGACCCGGCCATGCGGATAGCAATCCAGTCTGTATTTCCTGATGCACATCATCGGTTATGTGCCTGGCATCTGCTGAGGAATGCGACTGCTAACGTAAGCGACCCGAGATTCACACAAATGATTAGACACTGCATGTTGGCAGATATGGAAATCGATGAGTTCGAAGCGCATTGGGAGGCAATGCTCAACGAGTGCGGTGTTAGGGAGGTTGAGTGGGTTAAGGACTTGTACACCAAAAAGCACGCTTGGGCCACCGCATACATCCGCGGTAGATTTTTTGCTGGAGTCCGGACTACCTCTAGGTGCGAGTCACTACATGCCAAACTAGGGAGGTTTGTCGAGAGCAGGTACGGGGTGTTAGAATTTGTCAGAAATTTTCAAAGGTGTGTGGATTTTCTGCGTGACACCGAGGACGAGCTAGACTTTCGTTCATGGTACGGAACACCTGTGCTACAAACAGAGTTTGTTGAGCTGGAAAAGTCCGGGTGGACGATGTTCACCCGCGAAATGTTTCTCAGATTCCGGGATAGCCTCAAACGGTGTGTTCGTGTTAGAATTTGTGAATTTAATGAAACTGAGAACCCTCATGCATACACTCTCCAGAAGTATCGAAGGCCTGAGATGAATTGGAAGGTTTATAGGGACACTGTTGCGAACAGATTTACTTGCACCTGCATGCGTATGGAGTCGTTTGGTATTCCTTGTGTGCATATCCTTTCCGTGTGTGTTAGGCTTGACTTAGTGGAAATCCCTGAAAGCCTTGTGCTGCGCAGGTGGTCTAAGGCAGCCAAAATGGAGGTCCATAACCAATGTGGTGAGCAACACACTGCTGACCGAAGTGTGACCTATAGGACACGAGTGGGTGCTTTCTCCCAGCTTTGTAAGCGTTTAGGGCGTGTTGCGTGCATGAGTGATGAAGACTTCAAGCTTTACTCAAAGAAGCTTCTGAGTGATGCTCTCTTCCTTGAAATAAAGAACGGCCTAAGACCTTCAACGGATGATCTCACAGCAGCACAAGATTGCGGGGTGAAGGACCCGATTCGTGTTAGAACAAAAGGCACGGGTCGGATGAGTCAAGCATGTGGGTCTGCACCGAAAACCAAAAGAAAGTGCAGCACATGCGGGAAGCTAGGGCACCGGAGGACTAGATGCCCCAACGGAGGCGCGCAACCTTCACCAAGGAATGATAAATCACCTGCTGGGATAAATAAACGCAAGCGATCAAAGGTTACCGCCTAA 2439 0.49 MYGQVKGLGRSKLGRKLFGVEVVRHRWWVELVAAGREALKVSRCLPAVAFPEAPAYKTSNRSVVWWSLLSLCLSDQLSSQLPSPSVVIRATGSIMFVFLFQDTMYDTRVEEDAESSDWEGRGASMLPVFLGLDGLRAEDVLEMKFSSPQEAGGFYNNYSRLKGFASRRGKTVRNTAGEIVRYSFVCNRQGFREKKWLEKVDRKREHKVVTRCGCMAEMRIKRKDGSGRWYVSRFVEEHNHELAYGKLVGYLRSHRKISEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLVTFTKQDMYNEIRKQRGLQGGDVSAAISDDRCQEDYGIFGDVLAFDATYGRNKYNLPVVVFSGVNHHNQTCVFGTAMVSCESQESYIWVLRQFLECMQGKAPQSVITDGDPAMRIAIQSVFPDAHHRLCAWHLLRNATANVSDPRFTQMIRHCMLADMEIDEFEAHWEAMLNECGVREVEWVKDLYTKKHAWATAYIRGRFFAGVRTTSRCESLHAKLGRFVESRYGVLEFVRNFQRCVDFLRDTEDELDFRSWYGTPVLQTEFVELEKSGWTMFTREMFLRFRDSLKRCVRVRICEFNETENPHAYTLQKYRRPEMNWKVYRDTVANRFTCTCMRMESFGIPCVHILSVCVRLDLVEIPESLVLRRWSKAAKMEVHNQCGEQHTADRSVTYRTRVGAFSQLCKRLGRVACMSDEDFKLYSKKLLSDALFLEIKNGLRPSTDDLTAAQDCGVKDPIRVRTKGTGRMSQACGSAPKTKRKCSTCGKLGHRRTRCPNGGAQPSPRNDKSPAGINKRKRSKVTA 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01391 812 ProSiteProfiles Zinc finger CCHC-type profile. 769 786 IPR001878 GO:0003676|GO:0008270
Aip10g01391 812 ProSiteProfiles Zinc finger SWIM-type profile. 613 646 IPR007527 GO:0008270
Aip10g01391 812 MobiDBLite consensus disorder prediction 758 812 - -
Aip10g01391 812 PANTHER OS02G0262500 PROTEIN 139 313 - -
Aip10g01391 812 PANTHER OS02G0262500 PROTEIN 319 685 - -
Aip10g01391 812 SMART 26again6 621 648 IPR006564 GO:0008270
Aip10g01391 812 Pfam FAR1 DNA-binding domain 154 243 IPR004330 -
Aip10g01391 812 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 139 313 IPR031052 GO:0006355
Aip10g01391 812 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 319 685 IPR031052 GO:0006355
Aip10g01391 812 SUPERFAMILY Retrovirus zinc finger-like domains 750 788 IPR036875 GO:0003676|GO:0008270
Aip10g01391 812 Pfam SWIM zinc finger 622 643 IPR007527 GO:0008270
Aip10g01391 812 Pfam MULE transposase domain 333 427 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01391 Aip-Chr10 23625580 23628996 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip10g01391 MULE 5.1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01391 - - aip:107620408 1419.45