Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01381 ATGAGGTCTGGTCCAGTGCATAAGGTGTGGAAGCTCAAAGTATGTGTCATTAGACTTTGGACCGTTTCTCAATTTGCAAGATCTGGGATGAAGGCACCTATTGAGATGGTTGTCCTTGATAAAGAGGGAGATACAATTCAATGCACTGTAAAAGACATATTTGTTCCTATCTTCGAGGGCTTACTCGCTGAGAGCAACGTGTACGTGGTCACTAATTTTGGAGTTGCTTTGAATACCATCAAGTTCAAGCCTACTAGACACGAATTTAGGATCCATTTCAAGAGGGACACGATTGTGCGTCCGGTACAAGATTCTTCAGTTTCATTGAACGGATTTAATTTTGTTCCGTTCAAAACAATTCAATCAAAGTCTAAAGAAGATGGTTATTTAGTTAGGGTCATGGGTGTATCTAACACAAACTACAATTCGAAACTGTTTATCAATGTTGAGTTTCCAGCTGCCAGGGATTTCTTTGCGAGGGTGAACAAATTGGATCCTGTTGACGGACAAGGCATAATGCCGCTGGTCTGTGGTCAACCTGTTTCAGATGAGGAGGATTTTTTGCGTCTGTCAGTCTACAAAACAATTGCAGAGATAAAGGAGCATAATCAGGATGCTGTATTTGTTACAGTCGGGACGATTAAAGAAGTTGAGACTGAATTTGGTTGGGGGTACAAAGGATGTAAGAAGTGTCGTCGTGGCTTGAAGGAACTTGATAAAAAATATTTCTGTCCCAATTGCATTAGAGACTACGGGTTTTATGAGCCAAGGTACATCATCCACATAAGGGTGATAGACCACACCGATGCTGCCTCTTTTGTTTTGTTCGATGGAGAAGCTGCAAAGTTTCTTGGAGTTTCTACTAAGGACCTTAGGCAGTCTTGTGTGACTAAGGGTGTTGAGAAAAATTCCTGTCCCGAAGAGATTAATAAGCTTAGGGATATTAAGTTCATCTTCAAAGTGCAACTCAAGATGAGGAATCTGAACTCTTATGAACCATATGTGATTCATGTGCTGAGAATGACAAATGAGAATTCTCTGGTCTCTGCCTTCCTGGATAAATACAATCCTGACACTGGCCTTTTGTCCCATGAAAATTCTGAACTATTGAGTTTGTCTACTGGTCCATACAACACTTCTAAGGCTTGTGAGAGTGAGCCAACTCCATCACCTGCAGTTGATGAGAAACATAATTCTAAGATTCTCAGAGCTAAGAAACATATTGAAGAGATTGGAGATGAGTCAGTTTCATCCAAATCTAAGAAAGGGAAGTGGGTTGTGGTGGAGGACTAA 1293 0.4091 MRSGPVHKVWKLKVCVIRLWTVSQFARSGMKAPIEMVVLDKEGDTIQCTVKDIFVPIFEGLLAESNVYVVTNFGVALNTIKFKPTRHEFRIHFKRDTIVRPVQDSSVSLNGFNFVPFKTIQSKSKEDGYLVRVMGVSNTNYNSKLFINVEFPAARDFFARVNKLDPVDGQGIMPLVCGQPVSDEEDFLRLSVYKTIAEIKEHNQDAVFVTVGTIKEVETEFGWGYKGCKKCRRGLKELDKKYFCPNCIRDYGFYEPRYIIHIRVIDHTDAASFVLFDGEAAKFLGVSTKDLRQSCVTKGVEKNSCPEEINKLRDIKFIFKVQLKMRNLNSYEPYVIHVLRMTNENSLVSAFLDKYNPDTGLLSHENSELLSLSTGPYNTSKACESEPTPSPAVDEKHNSKILRAKKHIEEIGDESVSSKSKKGKWVVVED 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01381 430 CDD RPA1_DBD_A_like 11 99 - -
Aip10g01381 430 PANTHER REPLICATION FACTOR A 1, RFA1 185 353 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g01381 430 SUPERFAMILY Nucleic acid-binding proteins 193 342 IPR012340 -
Aip10g01381 430 PANTHER BNAC07G49340D PROTEIN 23 123 - -
Aip10g01381 430 CDD RPA1_DBD_C 196 329 IPR013955 -
Aip10g01381 430 Pfam Domain of unknown function DUF223 35 125 IPR003871 -
Aip10g01381 430 Gene3D - 4 105 IPR012340 -
Aip10g01381 430 PANTHER REPLICATION FACTOR A 1, RFA1 23 123 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g01381 430 SUPERFAMILY Nucleic acid-binding proteins 5 105 IPR012340 -
Aip10g01381 430 PANTHER BNAC07G49340D PROTEIN 185 353 - -
Aip10g01381 430 Pfam Replication factor-A C terminal domain 208 331 IPR013955 -
Aip10g01381 430 Gene3D - 185 354 IPR012340 -
Aip10g01381 430 MobiDBLite consensus disorder prediction 378 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01381 Aip-Chr10 23335467 23339146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01381 208 293 Core DNA Replication Machinery Family AT5G61000 32.184 1.24e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01381 - - adu:107477146 583.563