Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01380 ATGAACGATGGCAAACTTATTAACATGATGGTCATTCATATTGAGAATGACAGTTTACAGCTTAATATTGTTATTCTTGGACAGATGGTGGACCGGATCAAGGATTTTTTAGCATCGGGCGATCAACAACTACCAATAGTTATTTTTCAATTTGCAAGAGTAAAAAATGCTGGAGGTACCAATATTGTGCAGAACATTATGTATGGTACTAGACTCTTGATAAATCCAGATATTCCTGAGGTTTTGATGCTTCGAAAAAGAGAGATCTCGCAGTACCTGTCTGTGGTTTCTGGCAAACCAGCATATCTTGATGAAGATGAAGTTTTATATTCCATTGGGAGGAAGACAATAAAGGAGTTACGTGCTGCTGCGGATGTTGGATTCTATGTTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTGTTTGCAGCGTGAAGGCAGAAGCTAATGCGGATGAATACTTCTGCGATGGCTGTAATAAGGACGTGAATAATGTGCTTGACAGGTATAAGTTAAATTTGCTGGTTTTTGATGGTACTGGTACAACAAACTTTGTTGTGTTCGATAAGGAGGTCGCAGCACTATTCAGACGAACCTGTACTGAGATGGTGAAAGAGTTGAATGAAAAAGGGAAAGCAAGCAAAGATCTTACTGGTTTTAATGAGTTTTTCCTTGATAAGGAGTTTCTATTCAAGGTCGAAGTAGAAACTACTGAATGGTGCGATTCTTATGATGTATCGGTGATACGTTCTGATTCTACCAATTTACCGAGGTGGAGGGACACTCAAGGCCCGCCTCGAGGTGAAGATGGATGTTCTGTTTGTGATGAGTCACCTGATCCAATTGTGAAAAATTTGTCTGTTATTAAAAGACCTGTTGTGAGGCGTCTGTTGGATGAGTTCAACATGTCTGGTGCTCCTTCCATTAAAAAGTAG 960 0.401 MNDGKLINMMVIHIENDSLQLNIVILGQMVDRIKDFLASGDQQLPIVIFQFARVKNAGGTNIVQNIMYGTRLLINPDIPEVLMLRKREISQYLSVVSGKPAYLDEDEVLYSIGRKTIKELRAAADVGFYVVRATVLDVEPVPSWWYKSCVCSVKAEANADEYFCDGCNKDVNNVLDRYKLNLLVFDGTGTTNFVVFDKEVAALFRRTCTEMVKELNEKGKASKDLTGFNEFFLDKEFLFKVEVETTEWCDSYDVSVIRSDSTNLPRWRDTQGPPRGEDGCSVCDESPDPIVKNLSVIKRPVVRRLLDEFNMSGAPSIKK 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01380 319 PANTHER REPLICATION FACTOR A 1, RFA1 4 210 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g01380 319 Pfam Replication factor-A C terminal domain 128 251 IPR013955 -
Aip10g01380 319 Gene3D - 1 92 IPR012340 -
Aip10g01380 319 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 4 210 - -
Aip10g01380 319 SUPERFAMILY Nucleic acid-binding proteins 113 254 IPR012340 -
Aip10g01380 319 Gene3D - 106 265 IPR012340 -
Aip10g01380 319 CDD RPA1_DBD_C 115 244 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01380 Aip-Chr10 23323482 23326012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01380 43 248 Core DNA Replication Machinery Family AT5G61000 22.831 2.32e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01380 - - ahf:112729129 603.594