LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g01378	ATGGATTCGTCTTCCGACGACGAAGACGACCACCACAACCTCGTCGACCAAAATGTTGGAAAGCCTCTCACTCTTCCCTCCACCTCCACCACTGCCGGCGCCGCCACTTTCCACGTCGAAGATATCAGCTCGAGCTCCCGGCGATTCCAGCTCCGGAAGAGGTACATTTTCTTGATCCTCGCCGTCATCGCCGTCGTTCTCTTCTTCTCTGTTACTGAAATTCGCCATGGCCTTATCGCGAGCTTCTCCTCCGATCATCTCTCCGGTCAAATGAAGGAATCCGAATTGCGCGCCATTAACCTCTTGCGGGAGCAGCAACTAGGGCTCTTAACCGCTTGGAATCGAACTTTTCAGCACAATGCGTCACATTCCGATCCGAATCAATTGGAGGATCTGAAATCGGCGCTGTTCAAACAGATCTCTCTTAACAGAGAGATTCAGCAGGTTCTGCTGAATCCGCATCGAACAGGTAACACAAATGAGCCTGAATTCGATTTTAGAAATCCTATTTTGTTCGGTGGAGTTAGTTACAATAGGTGTAGAACAATGGATCAGAACCTCTCACAGAGAAAAACCATTGATTGGAACCCTAAAGATGGTAAATTTTTGCTTGCTGTATGCGTTTCTGGCCAAATGTCAAACCACTTGATTTGTTTGGAAAAACATATGTTCTTTGCTGCAATTCTTAGTAGGACTCTGGTGATTCCAAGTTCCAAAATTGATTATCAGTATGACAGGGTAATTGACATTGATCACATTAACAAGTGTTTGGGGAAAAAAGTTGTGATTTCCTTTGAGGAATTTGCAAGTGCTAAGAAGGATCATTTGCACATTAATAGTTTCCTGTGTTATTTCTCTCTGCCACAGCCTTGTTATCTTGACGATGATCATTTGAAGAAGTTGGGGTCTTTGGGTTTGTTAATGAGCAAGCCTGAGCCTGTTTGGCAGGAAGATACTCGGAAGCCGACACCAAAGACGATTAAGGATGTTCTGGATAAGTTCGGTCATGATGATGATGTTATGGCTATTGGGGATGTTTTCTTTGCTGATTTGGAGAATCAGTGGGTAATGCAGCCAGGTGGCCCTATTGCTCACAAGTGCAAGACTCTGATTGAACCTAGCCGCCTCATTGTGCTCACTGCTCAGCGATTTGTTCAGACCTTCCTGGGAAAGAAGTTCATCGCCTTGCATTTTCGAAGACATGGCTTCTTAAAATTCTGTAATCTTAAGAAACCAAGTTGCTTTTACCCGATTCCTCAAGCTGCAGATTGCATATTGAGGGTGGTTGAAACGGCCGATGCACCTGTCATTTATCTTTCTACGGATGCTGCAGAAAGCGAGACTGGTCTGCTTCAGTCAATGGTTGTGCTGGATGGCAAGCCTGTTCTGCTTGTAAAGCGCCCTGCTCGTAACTCAGCAGAGAAATGGGATGCTTTGTTATATAGGAGTGGCATTGAGGCAGACTCACAGGTTGAAGCTATGTTAGACAAAACGATATGTGCGATGTCTACAGTGTTCATTGGAGCCCCTGGTTCCACTTTCACTGAAGATATCCTGCGGCTGAGAAAGGATTGGGGATCAGCATCGTTGTGCGATGAGTACCTTTGCCAAGGATTGCATCTTGAGAGCTTTGCTAAAGGGGATTATAGTAGTAAAAGGTCTAAAGTGGGGAGAAAGTTATTTGGAGTGGAGGTCGTTCGTCACCGGTGGTTGGTGGAGCTCGTCGCGGCAGGGCGTGAGGCTCTGAAGGTCAGTCGCTGTCTGCCTGCTGTTGCTTTCCCGGAAGCTCCAGCATACAAAACCAGCAACCGGTCCGTGGTGTGGTGGTCGTTGTTGTCACTTTGCTTATCTGATCAGTTAAGTTCTCAGCTACCATCGCCGTTGGTAGTCATCTGGGCAATCTTTGTTTGTAGTTGGCAAGTGGATGCTGTGAGGATGTTGGAATCATGTTGGATAGTAGATGAGGTAATAATGGCATCAAGTAGCAAGTTTTGGAAGGATGCGTGTATGTGGAATGAGCCTCTTGCGGATTTCTGGATGGAGGGCAATGGTGGTGTGTCAAATGCACAGGACACAATGTTTGATACGAGAGTGGAGGAAGATGCTGAGTTATCCGATTGGGAAGGAAGGGGGGCTTCAATGTTGCCCGGATTTTTGGGTTTGGATGGGTTGCGAGCAGAAGATGTTCTTGAAATGGAGTTCTCTTCACCTCAGGAGGCAGGCGGCTTCTATAACAATTACAGCCGACTAAAGGGCTTTGCATCACGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATCGTGCGGTACACTTTTGTTTGTAATAGGCAAGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGGTCGTTACCCGATGCGGATGCATGGCGGAGATGAGGATAAAGAGGAAAGACGGCAGTGGGAGGTGGTATGTTTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCATATGGGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGGGAGATTGGGATTAGCATACCTAAGATTTATGAGTCTTTCGCAGCACAACTGGGGGGCTTTAATCTGGTAACATTCACAAAGCAAGATATGTATAATGAGATACGGAAACAGAGAGGTCTGCAAGGCGGAGATGTAAGTGCGGCTATTAGGTACTTGGAAGGTCTGGCACGCATGGATGCGAAAATGTTTTGGCGTTACAAGTTAGGGGCAGGGCAACACCTATGCAACTTGTTTTGGAGCGACGGTCGTTGCCAGGAAGATTATGGGATTTTCGGCGATGTGCTAGCATTCGACGCTACGTATGGCCGCAACAAGTACAACCTACCCGTTGTAGTATTTTCCGGAGTAAACCACCACAACCAGACATGCGTATTTGGAACAGCAATGGTCTCATGCGAATCGCAGGAGTCATATATTTGGGTTCTTCGCCAGTTTCTGGAATGCATGCAAGGTAAGGCACCGCAATCGGTCATCACGGATGGCGACCCGGCCATGCGGATAGCAATCCAGTCTGTATTTCCTGATGCACATCATCGGTTGTGTGCCTGGCATCTGCTGAGGAACGCGACTGCTAACGTAAGCGACCCGAGATTCACACAAATGTTTAGACACTGCATGTTGGCAGATATGGAAATCGATGAGTTCGAAGCGCATTGGGAGGCAATGCTCAACGAGTGCGGTGTTAGGGAGGTTGAGTGGGTTAAGGACTTGTACACCAAAAAGCACGCTTGGGCCATCGCATACATCCGCGGTAGATTTTTTGCTGGAGTCCGGACTACCTCTAGGTGCGAGTCACTACATGCCAAACTAGGGAGGTTTGTCGAGAGCAGGTACGGGGTGTTAGAATTTGTCAGAAATTTTCAAAGGTGTGTGGATTTTCTGCGTGACACCGAGGACGAGCTAGACTTTCGTTCATGGTACGGAACACCTGTGCTACAAACAGAGTTTGTTGAGCTGGAAAAGTCCGGGTGGACGATGTTCACCCGCGAAATGTTTCTCAGATTCCGGGATAGCCTGAAACGGTGTGTTCGTGTTAGAATTTGTGAATTTAATGAAACTGAGAACCCTCATGCATACACTCTCCAGAAGTATCGAAGGCCTGAGATGAATTGGAAGGTTTATAGGGACCCTGTCGCGAACATATTTACTTGCACCTGCATGCGTATGGAGTCGTTTGGTATTCCTTGTGTGCATATCCTTTCCGTGTGTGTTAGGCTTGACTTAGTGGAAATCCCTGAAAGCCTTGTGCTGCGCAGGTGGTCTAAGGCAGCCAAAATGGAGGTCCATAACCAATGTGGTGAGCAACACACTGCTGACCGAAGTGTGACCTATAGGACACGAGTGGGTGCTTTCTCCCAGCTTTGTAAGCGTTTAGGGCGTGTTGCGTGCATGAGTGATGAAGACTTCAAGCTTTACTCAAAGAAGCTTCTGAGTGATGCTCTCTTCCTTAAAATAAAGTACGGCCTAAGACCATCAACGGATGATATCACAGCAGCACAAGATTGCGGGGTGAAGGACCCGATTCGTGTTAGAACAAAAGGCACGGGTCGGATGAGTCAAGCATGTGGGTCTACCCCGAAAACCAAAAGAAAGTGTAGCACATGCGGGAAGCTAGGGCACTGGAGGACTAGATGCCCCAACGGAGGCGCGCAACCTTCACCAAGGAATGATAAATCACCTGCTGGGATAAATAAACGCAAGCGATCAAAGGTTACCGCCTAA	4296	0.4749	MDSSSDDEDDHHNLVDQNVGKPLTLPSTSTTAGAATFHVEDISSSSRRFQLRKRYIFLILAVIAVVLFFSVTEIRHGLIASFSSDHLSGQMKESELRAINLLREQQLGLLTAWNRTFQHNASHSDPNQLEDLKSALFKQISLNREIQQVLLNPHRTGNTNEPEFDFRNPILFGGVSYNRCRTMDQNLSQRKTIDWNPKDGKFLLAVCVSGQMSNHLICLEKHMFFAAILSRTLVIPSSKIDYQYDRVIDIDHINKCLGKKVVISFEEFASAKKDHLHINSFLCYFSLPQPCYLDDDHLKKLGSLGLLMSKPEPVWQEDTRKPTPKTIKDVLDKFGHDDDVMAIGDVFFADLENQWVMQPGGPIAHKCKTLIEPSRLIVLTAQRFVQTFLGKKFIALHFRRHGFLKFCNLKKPSCFYPIPQAADCILRVVETADAPVIYLSTDAAESETGLLQSMVVLDGKPVLLVKRPARNSAEKWDALLYRSGIEADSQVEAMLDKTICAMSTVFIGAPGSTFTEDILRLRKDWGSASLCDEYLCQGLHLESFAKGDYSSKRSKVGRKLFGVEVVRHRWLVELVAAGREALKVSRCLPAVAFPEAPAYKTSNRSVVWWSLLSLCLSDQLSSQLPSPLVVIWAIFVCSWQVDAVRMLESCWIVDEVIMASSSKFWKDACMWNEPLADFWMEGNGGVSNAQDTMFDTRVEEDAELSDWEGRGASMLPGFLGLDGLRAEDVLEMEFSSPQEAGGFYNNYSRLKGFASRRGKTVRNTAGEIVRYTFVCNRQGFREKKWLEKVDRKREHKVVTRCGCMAEMRIKRKDGSGRWYVSRFVEEHNHELAYGKLVDYLRSHRKISEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLVTFTKQDMYNEIRKQRGLQGGDVSAAIRYLEGLARMDAKMFWRYKLGAGQHLCNLFWSDGRCQEDYGIFGDVLAFDATYGRNKYNLPVVVFSGVNHHNQTCVFGTAMVSCESQESYIWVLRQFLECMQGKAPQSVITDGDPAMRIAIQSVFPDAHHRLCAWHLLRNATANVSDPRFTQMFRHCMLADMEIDEFEAHWEAMLNECGVREVEWVKDLYTKKHAWAIAYIRGRFFAGVRTTSRCESLHAKLGRFVESRYGVLEFVRNFQRCVDFLRDTEDELDFRSWYGTPVLQTEFVELEKSGWTMFTREMFLRFRDSLKRCVRVRICEFNETENPHAYTLQKYRRPEMNWKVYRDPVANIFTCTCMRMESFGIPCVHILSVCVRLDLVEIPESLVLRRWSKAAKMEVHNQCGEQHTADRSVTYRTRVGAFSQLCKRLGRVACMSDEDFKLYSKKLLSDALFLKIKYGLRPSTDDITAAQDCGVKDPIRVRTKGTGRMSQACGSTPKTKRKCSTCGKLGHWRTRCPNGGAQPSPRNDKSPAGINKRKRSKVTA	1431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip10g01378	1431	SUPERFAMILY	Retrovirus zinc finger-like domains	1369	1407	IPR036875	GO:0003676\|GO:0008270
	Aip10g01378	1431	ProSiteProfiles	Zinc finger CCHC-type profile.	1388	1405	IPR001878	GO:0003676\|GO:0008270
	Aip10g01378	1431	SMART	26again6	1240	1267	IPR006564	GO:0008270
	Aip10g01378	1431	Pfam	FAR1 DNA-binding domain	743	832	IPR004330	-
	Aip10g01378	1431	Gene3D	-	368	532	-	-
	Aip10g01378	1431	SMART	c2hcfinal6	1389	1405	IPR001878	GO:0003676\|GO:0008270
	Aip10g01378	1431	MobiDBLite	consensus disorder prediction	1	16	-	-
	Aip10g01378	1431	PANTHER	GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2	3	539	IPR045130	GO:0036066\|GO:0046922
	Aip10g01378	1431	ProSiteProfiles	Zinc finger SWIM-type profile.	1232	1265	IPR007527	GO:0008270
	Aip10g01378	1431	MobiDBLite	consensus disorder prediction	1	26	-	-
	Aip10g01378	1431	MobiDBLite	consensus disorder prediction	1402	1431	-	-
	Aip10g01378	1431	CDD	O-FucT_like	364	522	-	-
	Aip10g01378	1431	PANTHER	-	3	539	-	-
	Aip10g01378	1431	Pfam	MULE transposase domain	952	1046	IPR018289	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g01378	Aip-Chr10	23290982	23298952	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Aip10g01378		O-FucT	1.3e-07	CL0113

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip10g01378	K03691		-	aip:107620408	1664.82