Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01366 ATGGATCTTGAGAGTCTTGATAGTAATGAGCCAGGCTGGACTAGACCTCTTCGTCTTCTCCAAGAGCTTATTCCCATGGCGGCTATGAATGAAATAAATTTGTATTCTTGTAAAAATGATGACATGCTTTTAAAATATTCATACGCCATGCTGGCTTCTTTTGGGAAGAAGGCTTCTATTGGTCCAAAATTCTGGAACCATGTAGTAATTAAAGAGCTCTTAGAAGGTGATGATGATGATGATGCTTTTACAACCTGTGACATCGTCATAGGTCTTAATGATAATTGTTTTGCTGGTACAACAGTAATGGACCCTTTTTTCGATTTCCTTAATTTTGACACCGCTGTAGCTGCCGCCACCAACCCCAACAACAAGGTTCAGTCACCACTTCCTGAGATCCCAGGAGATAACAACAACAAAGTGGCAGCATGTGACGAGGTACTAGGAATGGAAAAAATGGTGGTTGGTGGTGCAGAAGATAAGAAGCAGCCCGAGAGGAAACTTAAGAACGTGTACAGGGGAATCAGGCGCAGGCCCTGGGGAAAGTGGGCCGCGGAGAAAAGGGATCCACACAAAGGGGCCCGTGTCTGGCTCGGCACTTTCAACACTGCCGAGGAGGCTGCTAGGGCCTACGACATCGCTGCTATACACATCCGAGGAAACAAAGCCAAGCTCAATTTTCCGAATACTATCAAGGACAACGGCGTCGAAGTCCTTCCATTGGCTAAGAAACCATGCCTTAGCGATGAGACCCAATTTCCCATGTTAACACCTCTCTCTGCCACGTTTGACAGTGATGATGGAAGCATGGAGGGATGGGAATTCAACCTGACACAGCAGATGTCGGGTCTTGAATGGCTCCTTGGATTGGAGAATGAGCAACCATCCCAAATGGGGGGTGATGATGTCTTTTCGAACAACCTTAACAACAACAATGATAGCACGCCAAAAACAATAACAACATGGACCTGTGGATGCTAG 981 0.4608 MDLESLDSNEPGWTRPLRLLQELIPMAAMNEINLYSCKNDDMLLKYSYAMLASFGKKASIGPKFWNHVVIKELLEGDDDDDAFTTCDIVIGLNDNCFAGTTVMDPFFDFLNFDTAVAAATNPNNKVQSPLPEIPGDNNNKVAACDEVLGMEKMVVGGAEDKKQPERKLKNVYRGIRRRPWGKWAAEKRDPHKGARVWLGTFNTAEEAARAYDIAAIHIRGNKAKLNFPNTIKDNGVEVLPLAKKPCLSDETQFPMLTPLSATFDSDDGSMEGWEFNLTQQMSGLEWLLGLENEQPSQMGGDDVFSNNLNNNNDSTPKTITTWTCGC 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01366 326 Gene3D AP2/ERF domain 171 230 IPR036955 GO:0003700|GO:0006355
Aip10g01366 326 PANTHER EREBP TRANSCRIPTION FACTOR 156 235 - -
Aip10g01366 326 CDD AP2 172 230 IPR001471 GO:0003700|GO:0006355
Aip10g01366 326 Pfam AP2 domain 171 220 IPR001471 GO:0003700|GO:0006355
Aip10g01366 326 PANTHER DNA-BINDING DOMAIN 156 235 IPR044808 GO:0003700|GO:0009873
Aip10g01366 326 SUPERFAMILY DNA-binding domain 171 229 IPR016177 GO:0003677
Aip10g01366 326 ProSiteProfiles AP2/ERF domain profile. 171 228 IPR001471 GO:0003700|GO:0006355
Aip10g01366 326 SMART rav1_2 171 234 IPR001471 GO:0003700|GO:0006355
Aip10g01366 326 PRINTS Ethylene responsive element binding protein signature 194 210 IPR001471 GO:0003700|GO:0006355
Aip10g01366 326 PRINTS Ethylene responsive element binding protein signature 172 183 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01366 Aip-Chr10 22837942 22847663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01366 138 298 AP2-EREBP Transcription Factor Family AT3G16770 42.188 2.46e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip10g01366 AP2 9.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01366 K09286 - gmx:100817253 152.91