Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01358 ATGAATTCACCATCGACGCAGTTCGTTTCCTCGAGAAGGATGGGTGTGTATGATCCTATCCAGCAGATCAATATGTGGGGAGATAGCCTCAAAAGTAATGTCAATTTAAGTGCATCCATTCCCTTAATTGATGAAGCCGACATTAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATCCTGGGAACGAATATCAAATATGACCAAGAAGCAAGTAAACCTGTTGATAAGATACAGAGACGACTTGCGCAAAATCGAGAGGCTGCTCGGAAGAGTCGTTTGCGGAAAAAGGCCTATGTGCAGCAATTAGAATCTAGTCGTTTGAAGTTGATGCAGCTAGAGCAAGAGCTTGAACGTGCGAGACAGCAGGGAATGTATGTAGCCGGTGGATTGGATACTAATCATCTAGGTTTTGCTGGACCTATTAATTCAGGAATCACAGCTTTCGAGATGGAGTATGGACACTGGGTTGAGAAGCAAAATAGTCAAATCTTAGAACTGAGAAACGCTTTAAATTCTCATATTGGTGACTTAGAGCTGAGGATACTTGTAGATGATATGATGAATCACTACACTGAAATCTTTCGTATGAAATCTGCTGCTGCAAAAGCAGACGTTTTCTATGTAATGTCCGGCATGTGGAAAACTACGGCCGAGAGATTTTTCTTATGGATTGGAGGCTTTCGCCCCTCTGAACTTCTAAAGGTTCTTCTTCCTTTGATTGAACCTTTGACGGAGCAACAACGATTGGATGTCTGCAACCTCGGACAATCATGTCAGCAAGCGGAAGACGCCCTTTCACAAGGTATGGAGAAACTACAGCAAACACTTGCTGATAGCATAGCCGCCGGACAACTGATGGAAGGAAGTTATATTCCGCAGATGGCTACTGCAATAGAGAAGTTGGAAGCTCTTGTGAGCTTTGTGAACTAG 936 0.4327 MNSPSTQFVSSRRMGVYDPIQQINMWGDSLKSNVNLSASIPLIDEADIKFDSQSEDASHGILGTNIKYDQEASKPVDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYVAGGLDTNHLGFAGPINSGITAFEMEYGHWVEKQNSQILELRNALNSHIGDLELRILVDDMMNHYTEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLLPLIEPLTEQQRLDVCNLGQSCQQAEDALSQGMEKLQQTLADSIAAGQLMEGSYIPQMATAIEKLEALVSFVN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01358 311 PANTHER TRANSCRIPTION FACTOR TGA9 1 311 - -
Aip10g01358 311 ProSiteProfiles DOG1 domain profile. 147 311 IPR025422 GO:0006351|GO:0043565
Aip10g01358 311 Coils Coil 97 124 - -
Aip10g01358 311 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Aip10g01358 311 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Aip10g01358 311 Pfam bZIP transcription factor 77 112 IPR004827 GO:0003700|GO:0006355
Aip10g01358 311 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Aip10g01358 311 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Aip10g01358 311 PANTHER TRANSCRIPTION FACTOR TGA1 1 311 - -
Aip10g01358 311 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Aip10g01358 311 CDD bZIP_HBP1b-like 78 130 - -
Aip10g01358 311 Gene3D - 77 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01358 Aip-Chr10 22583392 22588824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01358 1 311 Calmodulin-binding Proteins AT5G65210 69.401 9.54e-160 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aip10g01358 DOG1 4.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01358 K14431 - gmx:100793353 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03599 03 116836777 116839518 Aip10g01358 10 22583392 22588824 PCT