Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01348 ATGATGATGATAGGTCCAATCACAACAAAGAAGTACCTCAGATTCATCGAAGAGAAGAACCCAACAATTTGCTACAGCAAGAAGAGTAGTAAGTTATTGAAGCTGAAACCGCCACGGCACGTGGAGTGCACGCTATGCTTGTCGGAGTTCATGGAAGGGGAGAAGCTGAGGAGTCTGAAATGCCAACACACGTTTCACAGGGATTGCTTAGACACATGGCTCAAAGACTACTGCGCCACGTGTCCTTTGTGCAGGTTAAAAGTGGTGTCCGATGATGTTGTTTCCCAGCACCGTGAGCTTAGAAAGCAAGCTGATTCTAACGGTAACGGTGAACAGCTAACGTATTTTTTAGCCGTGTTACGTGGCGGTAACACTTTGCAAAGTTAG 387 0.4625 MMMIGPITTKKYLRFIEEKNPTICYSKKSSKLLKLKPPRHVECTLCLSEFMEGEKLRSLKCQHTFHRDCLDTWLKDYCATCPLCRLKVVSDDVVSQHRELRKQADSNGNGEQLTYFLAVLRGGNTLQS 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01348 128 PANTHER - 6 125 - -
Aip10g01348 128 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 125 - -
Aip10g01348 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 91 IPR013083 -
Aip10g01348 128 SUPERFAMILY RING/U-box 42 91 - -
Aip10g01348 128 ProSiteProfiles Zinc finger RING-type profile. 43 85 IPR001841 -
Aip10g01348 128 SMART ring_2 43 84 IPR001841 -
Aip10g01348 128 Pfam Ring finger domain 42 85 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01348 Aip-Chr10 22362273 22362841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01348 42 96 C3H Transcription Factor Family AT1G15100 52.727 9.75e-17 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01348 K16282 - gmx:102661133 150.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03605 03 117052445 117053561 Aip10g01348 10 22362273 22362841 PCT