Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01344 ATGGCTCGGTCAATGACTGTGAAAGTTATGAGTGCTGTGGTTGAAAATGCTATCCCAGTGTTGGAAGATGCATCATCAGTTCATGCTCGTCAAGGAGCAGGCATGTTGATTAATTTTCTTGTTCAGGGCCTGGGGGTAGAGTTGGTCCCTTACGCTCCATTGTTGGTAGTTCCACTTCTAAGGCCTTCCTCAACCACATTGAGAAGGTACCAACAAGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGACATCGATTATTTGGGACAGCTTCTGTGGAATTACTGTATTTTAGATGAAAGGCATATAATCAAGAATGCTAAGTCCAAAGTTACACTTGCTGTAAAGCAGTTAAAAGCCCAACACCACTTGATATTGAGTGGGACTCCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCTGGATTTCTTGGAACATAG 498 0.4116 MARSMTVKVMSAVVENAIPVLEDASSVHARQGAGMLINFLVQGLGVELVPYAPLLVVPLLRPSSTTLRRYQQEGINWLAFLKRFKLHGILCDDMGLDIDYLGQLLWNYCILDERHIIKNAKSKVTLAVKQLKAQHHLILSGTPIQNNIMDLWSLFDFLMPGFLGT 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01344 165 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 97 161 IPR044972 GO:0003677|GO:0016887|GO:0017025
Aip10g01344 165 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 64 IPR044972 GO:0003677|GO:0016887|GO:0017025
Aip10g01344 165 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 65 96 IPR044972 GO:0003677|GO:0016887|GO:0017025
Aip10g01344 165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 164 IPR027417 -
Aip10g01344 165 Pfam SNF2-related domain 104 164 IPR000330 GO:0005524|GO:0140658
Aip10g01344 165 Gene3D - 56 96 IPR038718 -
Aip10g01344 165 Gene3D - 97 165 IPR038718 -
Aip10g01344 165 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 100 161 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01344 Aip-Chr10 22052621 22054172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01344 106 158 RAD5 or RAD16-like Gene Family AT5G22750 52.830 1.12e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip10g01344 SNF2_N 1.7e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01344 K15192 - aip:107623796 145.976