Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01285 ATGCCTCCTCCATTTGATATGATTTCCAAGATACATCTTCCTAGAGAGGCTTGGAGGCTGAAAGCTAGGGTTCTAAGGCTTTGCGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTAAAAAACTTCAAGATACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAATTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAATCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTACCTTTTTCTGAGCTGTTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCGTTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTATTTGGGGACTATGTTAATCAAGTAAATCATTTTCTTGCCTCTGGCTATGTGGAGCAGCCTGTTTTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGGTTGAGCAAGGTGTCAATGGTACCCAGCCACTCTTTATTGCAAATGAGGGTAAAGTTGTTTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTCTGTGGAAAGGGTATCTATCATCAAAATGGTGCATATTACTATGATTTTTGTTTAAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTCATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTCTTGTATGTGGGGATACTTATCCTCCCATATTCCAAGGACTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAACTTCCTGATTATGATGCTGATGACGAGTCTACTCCAAAAAAGGTATTGGATTCAGTGAATGATGGGAAGGGTCCACCGCAGTTTATAATAAGTGGTCAAAATTATCATCGGATTGGAAGTTTGCTCCCAGATGCTGGTCCGAAGCCTAAATTTGCCCAGTTATATATATACGACACTCAGCATGAGATAATGCATAGGCAGCGAATCTTTGGGCAAACATCTGAGATAGATAAAGAATTGATAGCTGAGTTATTACAAATGATCGATACTCATAATGTCATAGCACAGTCATTTCGAAGAGTTAGAGAATTCTATCAGTGTCATCCATCTGAGATTTTCTCTTTGAAGTTGTATTCGCAAAGGAAGGTTGATCGAAGAATTTACAATGCTCCTTCTTGCGATGAAGTTGCTGCTTTGATTGTTGGAGATTTTGATTCATCGGATCATGGCCATGACATTATTGTTCGATCTACTGGTGGTCAGTTGCAACGTATTTATGAAACTCATGCTCTGTATTGGCCCTTACAGTATCCTTTGTTGTTTCCATATGGTGAGGATGGTTACCAACTGAACATTGGTTATCGAGGTGAACAGCCTGGATATGTTCCTGGAAGGAGAACAAGGGTTTCCCTTAGGGAATTCATATGTTTTCATCTCCAGATTAGGGAACACGAAGATAGAATTATTCACAAGTGTAGACGGTTATTTCAGCAATTTGTTGTTAATTGTTTCACCATGATTGAGTCCCAAAGGTTGCATGAGATTAGAATGAAGAAAAGTACAATTAGAGGAAAAGTCCTTCAAGGAATAGAGGAGGCTATGCATCGTGGCGATGATGAAGCTTCTTCAATTGGGACACGAATCATTTTTCCTTTTTCCTTCACTGGTGGTAGATGTTATATGTTTAACCGTTGTCAGGATGCCATGACAATTTGTAAACATTTTGGCTATCCAGATTTATTCCTCACTATTATGTTTAATCCAAATTGGCCTGAATTTCAGCGATTCACAGAGCGAGAGCGAATTCCCATCACTGATCGTCCTGATATCTCTTGTCGTGTCTTTCTTGCCAAGTTGAAGTGCCTCCTTAGCGATCTCAAGGAAGGTGTGTTTTTTGGTCCACTTAATGCAGGTATGTTCTTTTCTCACTTAGCATCTCAATCTCTGTCTGTTGTCTTCGGACATGTAGTTGTCTGGCTTCTGTAG 2496 0.387 MPPPFDMISKIHLPREAWRLKARVLRLCVVPSFGNHEVPNSMEMILLDEHCKKLQDTVKKPLLNRFRDHIIEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRITVVAVDEDVIPKTCFNMLPFSELLNMTQDYDFLVDVVGLLTSVGEEKEYAKEGKIVKMIVLELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVLVIQLAKVKFFRGLQNVMYATQMLFNPDLPEVVEFRQSMVEQGVNGTQPLFIANEGKVVSLEDDFMRLTRKCTIEELQDNNEEGSFIIFGTIQGIVEDGGWWYSACVCGKGIYHQNGAYYYDFCLKHITNVTPRFKIKITVEDHSGEGIFLLFHREASYLLKKSCADLFTEVQRDASLVCGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDPTIIAMFELPDYDADDESTPKKVLDSVNDGKGPPQFIISGQNYHRIGSLLPDAGPKPKFAQLYIYDTQHEIMHRQRIFGQTSEIDKELIAELLQMIDTHNVIAQSFRRVREFYQCHPSEIFSLKLYSQRKVDRRIYNAPSCDEVAALIVGDFDSSDHGHDIIVRSTGGQLQRIYETHALYWPLQYPLLFPYGEDGYQLNIGYRGEQPGYVPGRRTRVSLREFICFHLQIREHEDRIIHKCRRLFQQFVVNCFTMIESQRLHEIRMKKSTIRGKVLQGIEEAMHRGDDEASSIGTRIIFPFSFTGGRCYMFNRCQDAMTICKHFGYPDLFLTIMFNPNWPEFQRFTERERIPITDRPDISCRVFLAKLKCLLSDLKEGVFFGPLNAGMFFSHLASQSLSVVFGHVVVWLL 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01285 831 CDD RPA1_DBD_B_like 140 239 - -
Aip10g01285 831 SUPERFAMILY Nucleic acid-binding proteins 3 110 IPR012340 -
Aip10g01285 831 CDD RPA1_DBD_A_like 19 107 - -
Aip10g01285 831 PANTHER DNA BINDING PROTEIN-LIKE 441 797 - -
Aip10g01285 831 PANTHER BNAC01G23600D PROTEIN 441 797 - -
Aip10g01285 831 SUPERFAMILY Nucleic acid-binding proteins 120 239 IPR012340 -
Aip10g01285 831 Gene3D - 5 112 IPR012340 -
Aip10g01285 831 SUPERFAMILY Nucleic acid-binding proteins 271 421 IPR012340 -
Aip10g01285 831 Pfam Domain of unknown function DUF223 43 135 IPR003871 -
Aip10g01285 831 Pfam Helitron helicase-like domain at N-terminus 645 807 IPR025476 -
Aip10g01285 831 Gene3D - 114 247 IPR012340 -
Aip10g01285 831 Pfam Replication factor-A C terminal domain 288 374 IPR013955 -
Aip10g01285 831 CDD RPA1_DBD_C 274 417 IPR013955 -
Aip10g01285 831 Gene3D - 262 423 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01285 Aip-Chr10 20453032 20458336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01285 17 368 Core DNA Replication Machinery Family AT5G08020 22.703 9.55e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01285 - - adu:107471135 745.347