Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01244 ATGGATATGTCCAAAAATTTTTGTTCCTTATTTAAATGTGAAATAAGAATAATACAAGTCCAAAATGTTGATTCCATAAAGTCCAAGGGGAATTTATTTGCAAGATTCTATCTTCCTTCAGGGAACAACAACAAAAGGATCCAACTTAACACTAAGAAGGTTCATTCCAAATCCTTTCCCTTTTGGAATGAGTCCTTCACTCTTGATTGTTCTTGCCCCCAAGAATTCTTGGATACACTCAAGCATGAAAGCCTTGTTTTGGAGTTGAGGCAAAGCAAGAAGATTTTGGGGTCAAATCTTGTGGGAAAAGGTGAGATTCCATGGAAGGAAATTCTTGAATCATCCCCAAACATGGTGTACAAAGAGTGGGTGAAGATGGTTCCATGCAAAGAAGAAGAACCTAAAGTTGAAGTTGAGATAAAAATACAAGTGGCTAAGAGGGAAGAGGAGAAGGAGAATAATAACAAGAGCTTCAATTTCAATTGGGATGAGTGTGGATGCAAAAATGGCCATGATCATGATCATAATGCATGGTTTAGTGCAGATGATTATGATGTACCACTGTCGCTATCGCTGCCTGCACTTAGCACCGTCACCACCACTTCTACTGCCGCCACACCACACTTTTCGGTCCTCTGCGTTGTTGCATTTCGTCTCTGCCCCTGCGAACTACTCAGAGCAAATTCTCTGCCGTCTACAAACGAGTTCTCAATAAGAAAATTTGCCTCTTTCTTACAACAAGGTCTTAGATATCTGCAAAGCAATGAAGCAAGCAAACCTACAATGGTTCACCAAAATATTTTAGTTGAAAAAGTTCTTCTTGACAATCAGTTTAACCCATTGATCATGGATGCTGGGTTCCCCAAGCTTCTAGCAGACGACAATGTTTATTCGGCACCGAAAGTTGGTGCTGCCATGGGATACCTAGCTCTTGAATACATTACCACTGGACGCATCACTGAGACGAGCGACGTTTATGCATTCGGTGTCATTGTTCTTCAAGTCCTGTCTGGAAAGACAACAGTACGGGGTTCAATCAGAATGGCAGTTGAGTTTTTGAGATTTGATGATTTTGTGGACACAAATCTAAAGAAAAAATATTCGAAACTAGAAGCAGCAATTCTTTCAAAGATTGCAGTGATGTGCATTCATAAGCTTTCTGAGCAAAGGCCAAAATGGTAG 1182 0.4036 MDMSKNFCSLFKCEIRIIQVQNVDSIKSKGNLFARFYLPSGNNNKRIQLNTKKVHSKSFPFWNESFTLDCSCPQEFLDTLKHESLVLELRQSKKILGSNLVGKGEIPWKEILESSPNMVYKEWVKMVPCKEEEPKVEVEIKIQVAKREEEKENNNKSFNFNWDECGCKNGHDHDHNAWFSADDYDVPLSLSLPALSTVTTTSTAATPHFSVLCVVAFRLCPCELLRANSLPSTNEFSIRKFASFLQQGLRYLQSNEASKPTMVHQNILVEKVLLDNQFNPLIMDAGFPKLLADDNVYSAPKVGAAMGYLALEYITTGRITETSDVYAFGVIVLQVLSGKTTVRGSIRMAVEFLRFDDFVDTNLKKKYSKLEAAILSKIAVMCIHKLSEQRPKW 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01244 393 PANTHER OSJNBA0006M15.15 PROTEIN 1 186 - -
Aip10g01244 393 Pfam C2 domain 13 117 IPR000008 -
Aip10g01244 393 Gene3D Transferase(Phosphotransferase) domain 1 224 393 - -
Aip10g01244 393 PANTHER OSJNBA0006M15.15 PROTEIN 1 186 - -
Aip10g01244 393 Coils Coil 135 155 - -
Aip10g01244 393 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Aip10g01244 393 CDD C2 14 125 - -
Aip10g01244 393 ProSiteProfiles Protein kinase domain profile. 90 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g01244 393 SUPERFAMILY Protein kinase-like (PK-like) 230 392 IPR011009 -
Aip10g01244 393 SMART C2_3c 12 120 IPR000008 -
Aip10g01244 393 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 143 IPR035892 -
Aip10g01244 393 Pfam Protein tyrosine and serine/threonine kinase 225 392 IPR001245 GO:0004672|GO:0006468
Aip10g01244 393 Gene3D C2 domain 2 150 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01244 Aip-Chr10 18786710 18791865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01244 239 391 Receptor kinase-like Gene Family AT1G53420 32.927 7.83e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Aip10g01244 PK_Tyr_Ser-Thr 2.9e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01244 - - ahf:112715181 365.155