Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01227 ATGAGCGGAATCGACTATGCGACTATGAAATGTGAATCTCAGGAGGAACCTTTGGCTCTAAGCATTGTTTCGTCTGGAGAATATGATGATGATACAGAGGATAATGATATTTTGGTATATAGTGGTCAGGGTGACTTCCACAAGAAAGATAAGAATGCAACTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAGAAGTTCACAACGGCATAATGAAGTAAGAGTCATCCGTGGACTGAAAGATGCTACTAACAAAAGCACAAAAATATATGTTTATGATGGTTTGTATAAAATCCAAGATTCTTGGATAGAAAAGGGGAAGTCTGGTGGTGGCATTTTTAAGTATAAGTTTGTAAGATTGCCTGAACAGCCCAGTGCTTTTGCTGTTTGGAAATCAGTTCAGAAATGGAAAGAAGGCACCCTTTCAAGGAGTGGTCTTATTATTAAAGATCTCTCTTCAGGAATCGAGAGTATTCCTGTATCACTTGTCAATGAGGTTGATAATGCAAAGGGTCCTGGTTTCTTCACTTATGTTCATTCTCTCAAAAACCCAAAACCATTTGGTTCAATTATGTCTTCTGATGGATGCAATTGTAACAAAGCATGTGTCCCGGGAGATTTGAGTTGCTCTTGCATTCAGAGAAATGTTGGTGATTTTCCATATATTGCAAATGGTTTTCGAGTAAGTCGGAAGCCACTGGTTCATGAATGTGGTGAATTATGTCTTCCGAATTGCAAAAATCGAGTGTACCAGTCTGGTTTAAAGCATTACATGGAAGTGTTCAAAACGATGGATCGAGGGTGGGGTCTTCGATCATTGGATCCTATTCGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTGTTGACAGAGCCAAGTTAAGTGTGAACGGGAGGGAAGGAGATAATGAGTACATATTTGATACAAGCCGTATTTTTAAACCTTTCAAGTGGAACTATGAACCTAGCTTACTGGAAGACGGGGCTTCAAGTGATGGCAATGAAGATTATGATATACAATCCCATCTAATTATAAGTGCCAAAGATGTTGGGAACGTGGCTAGATTCATGAATCATAGTTTTTCTTCCTCTTTCTTTTCACTTTCTCTCTCAGCAGTTACAGCTTCAAACTTATGTTGTTGCTTGGTTGGTTAG 1164 0.3909 MSGIDYATMKCESQEEPLALSIVSSGEYDDDTEDNDILVYSGQGDFHKKDKNATDQKLQRGNLALDRSSQRHNEVRVIRGLKDATNKSTKIYVYDGLYKIQDSWIEKGKSGGGIFKYKFVRLPEQPSAFAVWKSVQKWKEGTLSRSGLIIKDLSSGIESIPVSLVNEVDNAKGPGFFTYVHSLKNPKPFGSIMSSDGCNCNKACVPGDLSCSCIQRNVGDFPYIANGFRVSRKPLVHECGELCLPNCKNRVYQSGLKHYMEVFKTMDRGWGLRSLDPIRAGTFICEYAGEVVDRAKLSVNGREGDNEYIFDTSRIFKPFKWNYEPSLLEDGASSDGNEDYDIQSHLIISAKDVGNVARFMNHSFSSSFFSLSLSAVTASNLCCCLVG 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01227 387 ProSiteProfiles YDG domain profile. 1 121 IPR003105 -
Aip10g01227 387 SUPERFAMILY SET domain 136 364 IPR046341 -
Aip10g01227 387 Pfam SAD/SRA domain 2 125 IPR003105 -
Aip10g01227 387 Gene3D SET domain 130 373 IPR046341 -
Aip10g01227 387 Gene3D - 1 129 IPR036987 -
Aip10g01227 387 Pfam SET domain 269 365 IPR001214 GO:0005515
Aip10g01227 387 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 1 369 - -
Aip10g01227 387 ProSiteProfiles SET domain profile. 258 387 IPR001214 GO:0005515
Aip10g01227 387 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 369 - -
Aip10g01227 387 SUPERFAMILY PUA domain-like 2 156 IPR015947 -
Aip10g01227 387 SMART set_7 258 380 IPR001214 GO:0005515
Aip10g01227 387 Pfam Pre-SET motif 154 250 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip10g01227 387 SMART G9a_1 1 125 IPR003105 -
Aip10g01227 387 SMART preset_2 150 244 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01227 Aip-Chr10 18597664 18599076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01227 1 381 Su(var)3-9 homologs AT5G04940 54.974 4.40e-147 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip10g01227 SAD_SRA 1.6e-33 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01227 K24405 - aip:107623168 786.178