Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01223 ATGTCCAATCCCAAAAATCAGTCTGAGGATCCGAATTCTCCGGATCCGAATTGGAATTCGGATCCACAACTCCCGCTCCGTAACCTCGCACAGATCCGAACCCGACTCGATTCCCTCCATCGCTTTTTATCGGAATCCATCACCTCCAACAACCCTCTCTCCGGCGACCAATCCGCTGCCGTCTCCGATCAAATCGCCTCCGCCATCCACCAAAGCATCGCCAACGCCTCCGCCCTCGTCTCCTACTCTAAAACCTTCCACTCGCCGGGTTCCACTCCCGCCGCCGCGCCGCCGTTACCTAGGGTTGACCTATCAGCCAGTGTCGAGAAACTCAAACGCGCGTCGGATCTGAAAATCGAGCCGCCGGACGAGGACACCGCAACCGATGAGTTTGCCGATAGCGACGAGATCGTGGAGCTCGACGCCGTGGAGATCCTCGCGGAGCACCTTCACTTCTGCGAGATCTGCGGGAAAGGGTTCCGGCGAGACGCGAATCTGCGCATGCATATGCGCGCTCACGGGAACCAGTTCAAGACACCGGAGGCACTCGCGAAGCCGGAGAATTCGTCGTCCGCCGCCGTGCGCAGCCGGTTCTCGTGCCCGTTCGAGGGATGCAACAGGAACAAGAACCACCGGCGGTTCAGGCCGCTGAAATCGATGGTGTGTGTGAAGAATCACTTCAAGAGAAGCCACTGCCCGAAGATGTATTCGTGCACGCGGTGCCATAAGAAGAGCTTTTCGGTGCTCTCTGATCTGAAGAGCCACATGAAAAATTGCGGAGAGTCGAAGTGGAAGTGCTCTTGTGGGACCACGTTCTCAAGAAAGGATAAACTTTTTGGGCACATTGCTTTGTTTGAAGGGCATGTACCCTTGCTTGAAGACGATAATAAGGGCAAGCATGTGCAGGAAGATGATGATAGTGATCATTTTAGTGATTTGCCTGATGGCTTTTTTGATGATTTGGGTGATTTGAGCTCTTTAGGGTTTCCCTTAATTTAA 999 0.5415 MSNPKNQSEDPNSPDPNWNSDPQLPLRNLAQIRTRLDSLHRFLSESITSNNPLSGDQSAAVSDQIASAIHQSIANASALVSYSKTFHSPGSTPAAAPPLPRVDLSASVEKLKRASDLKIEPPDEDTATDEFADSDEIVELDAVEILAEHLHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKPENSSSAAVRSRFSCPFEGCNRNKNHRRFRPLKSMVCVKNHFKRSHCPKMYSCTRCHKKSFSVLSDLKSHMKNCGESKWKCSCGTTFSRKDKLFGHIALFEGHVPLLEDDNKGKHVQEDDDSDHFSDLPDGFFDDLGDLSSLGFPLI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01223 332 Pfam Zinc finger, C2H2 type 152 173 IPR013087 -
Aip10g01223 332 Gene3D Classic Zinc Finger 151 174 - -
Aip10g01223 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Aip10g01223 332 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 6 308 IPR044300 GO:0010044|GO:0010447
Aip10g01223 332 SUPERFAMILY beta-beta-alpha zinc fingers 148 174 IPR036236 -
Aip10g01223 332 MobiDBLite consensus disorder prediction 1 26 - -
Aip10g01223 332 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 6 308 - -
Aip10g01223 332 Gene3D Classic Zinc Finger 224 290 - -
Aip10g01223 332 SMART c2h2final6 236 257 IPR013087 -
Aip10g01223 332 SMART c2h2final6 151 173 IPR013087 -
Aip10g01223 332 SMART c2h2final6 198 231 IPR013087 -
Aip10g01223 332 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01223 Aip-Chr10 18427275 18428688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01223 134 292 C2H2 Transcription Factor Family AT1G34370 63.190 1.33e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip10g01223 zf-C2H2 0.00022 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01223 - - cam:101491258 388.267