Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01197 ATGGCGGTTTTGAACCGCCTTTATCACTTGTATATAAAACACACATTGAACATTCCTAGTTACAGAAACACTTGGTTGAAAGTTGAAGCTCGTGTACGACGCTACTGCAGTGACCTCTCTCTCGTGTTCTCTAACGATCTCCTCCAACGAAGATCTTCTCCGGTGACATCTCCTCCAGCGACAGCTTTCCGGCATTTGCTGCGTGAACTATCTCACAAAATTCAAACTGCAGCTGCAGTAGCATCTTCAATTGCTGACAAATCATTTGGTGCCATAAGAATAGTAAGATCTTTTGCCCAAGAAGATTATGAAATTTCATGCTACTTTGAGAAAGTTAGTGAGACACACAGCCTTGGCCTTAAGCAAGCTGTGATCGTTGGACTCTTTTCTGGAGGCCTTAATGCAGCGTCCACACTTTCTGTTATCGTAGCAGTGGGATCTTCTATATCTTCTATATCTTTTTTGTTAATCACAACCTGTCTAATAAGAATAAATGGCTACCGGAAACCTGGTTTGATTGCATTGTTTGATGTTGATGTCACTCTTATAGCCCCAAGGAAGCTTTTTGAAGGTTTTTCTTTGTCTCTTCAAGCTCAGCTTCAATGGCTTCATGCCTCAGTTGTTGCAGCTGAATCTTTAGCTCTGACCCTGCAAGCATCTTGCAATTTAAAAGATTCAAAAGAACTTTTTGAAAGATGTCTAAATGCGCGGAAAGTCTTACTTCCTGATGACCATATTCAGGTGGATTTGACACCGCACATGCAGCTGCTGGGTGATGCTTATGATAGAGCGGCAATTAAGTTCCACGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGACGAATTTGACAAAGGAAGAATTTGTGCACGTGCTTCGGCGACAAGAGTTGAATGATTCAAGATGGGATTCAGATTATGAGAAACTGTGGAAGCCTCCACCAAATCATGGCTTTCTACCCTGCACTAAGCTTACTCCTAATTATACAAAGATCAGCAATATGAATATGTTTTCTGAAGACGACGAAGAAGAAGAAGCGCAACAAGGTATAGAAGATGGGATGCAAATCAGATGTGGAAGCTAA 1110 0.4162 MAVLNRLYHLYIKHTLNIPSYRNTWLKVEARVRRYCSDLSLVFSNDLLQRRSSPVTSPPATAFRHLLRELSHKIQTAAAVASSIADKSFGAIRIVRSFAQEDYEISCYFEKVSETHSLGLKQAVIVGLFSGGLNAASTLSVIVAVGSSISSISFLLITTCLIRINGYRKPGLIALFDVDVTLIAPRKLFEGFSLSLQAQLQWLHASVVAAESLALTLQASCNLKDSKELFERCLNARKVLLPDDHIQVDLTPHMQLLGDAYDRAAIKFHGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQELNDSRWDSDYEKLWKPPPNHGFLPCTKLTPNYTKISNMNMFSEDDEEEEAQQGIEDGMQIRCGS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01197 369 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 46 145 - -
Aip10g01197 369 Pfam ABC transporter transmembrane region 62 150 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g01197 369 Gene3D ABC transporter type 1, transmembrane domain 52 168 IPR036640 GO:0005524|GO:0016021
Aip10g01197 369 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 46 145 IPR039421 -
Aip10g01197 369 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 54 146 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g01197 369 SUPERFAMILY ABC transporter transmembrane region 59 154 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01197 Aip-Chr10 17796284 17800779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01197 266 318 AP2-EREBP Transcription Factor Family AT4G36920 71.698 3.48e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01197 - - ahf:112722681 343.199