Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01178 ATGAAGAAAACATTTTACCACCCCAACGCCACCATGCATCACCCTGACTACAACCATCGTCAGCCACCGCCATTTCGCCGCCACTTCTCGAAGCCAATCGATTTTCACCCCAACCACTACCGTCCGCCGGGACCTCCAAATCCCACCGCCTTCCAGGCTCCCAATTTCGTTCTCCACCTCCGCCGCGGCCGCCGCCATCTCCGCCGCGACCTCATAAACTCGATCATCTCCCAGTGCCCTTCCAAACCACAATCTTTCTCAATTTTTCCCTATTCCTCCGACCATAACTACCACCGCTGTTCCTCCTCCACCGTCGATGCAGCGATCCTCAATTTCCTTCAGTGGGTGGACACGCTCAACGCCGTCGCGTATCTCTGGGAAACGCGCCTCGACGGCATGCACGACCTAACTCCGGAGCTGAAGTCCAATGTGATGGTCCCTTCCGACGAGGACGAACTCTATTCTCGGCTACGCGCTGTCTTCGCGCGTCACGTGAAGAGTCTCATGCAAGAAGCGAAGGAATTGAAGCGTTGGGAAGGGGAGAGTGAGCGGTTAACGAAGGAGATCGCGCGTATGGAGCCACAGAAGAACAAACATTATCAAGTTGGGGAATTTTTTCAGATGAATGAGAATAAGAAAAGGTTTGAGGAAGAGAAAAATCTGGTGGAACGGAGGGTGAGGGAATTTCGGTGCGCCATGGAGTGCCTACTGAAGCTTCTAGAAGAGAAGGGTGGTGTTGATGAGGAAAGGAATGAAGGGGTTAATGGTAATTATTATTATGATGATTATGATTATGATGCTGTGTTTAGGTTTGATGGAAGGTTGAATTGGAAGAGGGTTCACAGTATTATCATGAGGGAGCGTCGTAGACTTGAGGAGGGTTTGCCAATTTACGCTTACCGGAGGGATATTCTTCACGACATTCATCATCAGCAGATAACGGTATTGGTTGGAGAGACTGGTTCTGGAAAGAGTACTCAGCTGGTACAGTTTCTTGCGGATTCAGGTGTAGGAGCTGCTGAGTCCATTATATGCACCCAACCCCGAAAAATTGCTGCGAGATCATTAGCTCAAAGAGTCCAGGAAGAAAGCAATGGATGTTATGAAGGCAATGCTATCGATAGTTATTCGACATTTTCATCCTTGAATGAGTTTGATTCTAAAATAACATTCATGACAGACCACTGTTTATTGCAGCATTACATGGCTGATAAGAATTTGTCTGGTGTCTCATGCATCATAGTTGATGAGGCTCATGAAAGGAGCTTAAACACTGATCTGTTGTTGGCATTGATCAAGAATTTACTCTCTAGAAGGGTTGAAATGCGGCTTATCATTATGTCTGCCACTGCTGATGCAAAGCAGCTGTCTGAATACTTCTATGGTTGTCGCATTGTTCATGTGCTCGGAAGAAGTTTTCCTGTGGACGTGAAATATGTTCCTTCTGACTATGCAGGACATTCTGAGTCTGGCATTGCCTCTTACGTTTCTGATGTTGTCAGAATGGCAATCGAGATTCACAAAACAGAGGAAGAGGGCACTATTCTTGCATTTTTGACCTCACAGATAGAAGTGGAATGGGCGTGTGACAACTTTGAAGCTGTGTGTGCAGTTGCTTTGCCCTTACATGGGAAACTTTTGCCCGGTGAGCAATTTCATGTTTTCCAGAACTATCCTGGAAAAAGGAAAGTGATATTTGCAACAAATCTTGCTGAGACATCTCTCACAATTCCTGGCGTTAAGTATGTGATAGATTCTGGTTTGATTAAAGATAGTCGATATGATCCTGGCAGTGGGATGAATGTTCTTAAGGTTTGTTGGATTAGCCAAAGCTCTGCTAATCAACGGGCTGGCCGTGCTGGGAGGACTGAACCTGGTCGGTGCTATAGATTGTACTCTGAAGCTGATTATCAGTGCATGGAACAAAATCAAGAACCTGAAATTAGAAGAGTGCATCTTGGTGTTGCAGTTTTGAGGATCCTTGCTTTAGGGGTGAAGAATGTGCAAGAGTTTGATTTTGTTGATGCTCCAAGTCAAAGATCCATTGAGATGGCTATCCAGAATCTAATCCTCTTAGGAGTCATTCAAATGAAGAATAATGTTATTGAATTAACAAATGAAGGTAGGTACCTGGTAAAAATGGGGATCGAACCTAGGCTTGGTAAACTGATTCTTGGCTGTCTTCATCATACACTGGGTAGAGAAGGCATTGTCCTTGCTGCCTTGATGGCTAATGCTAGCAGCATATTCTGCAGAGTTGGTAGTGAAAAGGATAAGCAAAGATCTGATTGTCTTAAAATGCAATTTTGCCATTGTGATGGCGACCTCTTTACCCTTCTTTCTGTGTACAAGGAATGGGAGGGTTTGCCTCGGGAGAGGAGGAACCAGTGGTGTTGGGAAAATAGTATCAATGCCAAATCTATGAGGAGATGCCAAGACACAATTTTAGAGCTAGAATCCTGTCTTGAGCGTGAACTTAACCTTGTTGTTCCCAGTTACTGGCGTTGGACACCCCAAATGCCCTCCGGATGTGATATGTATCTGAAAAGGGTTATACTGTCCTCCCTTCCTGAGAATGTAGCCATGTACTCTGGATGCAAGCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAGCTTCATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCTAGTTGGGTGGTTTTTAGTGAGCTTCTTTCACATTCTAATCAATATTTGGTCTGTGTAAGTGCTTTTGATTTTGAATCATTGCACAGCCTTGACCCTCCTCCCTTGTTTGATGTGTGCAATATGGAAAAGCGGAAATTGGAAACCAGGACATTGTCTGGTTTTTGTTGTACTCTTCTCAAGAAATTTTGTGGAAAAGCCAACACTAATTTGATTAGTCTTGTGTCACGCATACGGAAAGTTTGTGAGGATGAACGAATTTCTATTGAAGTTAATGTTGACCACAATGACATTCAGTTATATGCGACATCACATGATATGGAAACAGCCGTTCAATATGTAAATGAGGTTTTAGAATGTGAGAAAAAGTGGTTACGTACTGAGTGTATTGAAAAATGTTTGTATCATGGGTCTGGTTTCTCACCTATAGCTTTGTTTGGCTCTGGTGCAGAAATTAAGCATTTAGAACTTGGGAAGCGTTCCCTGAGTGTTGACGTTTGTCACCCAAACACAGATGCAATTGAAGACAAACAGCTCCTGATGTTTTTGGAGAAGAATACCTCAGCAAGTGTCTGTTCTGTCCACAAGTACACATGCACTGGAAGGGATGTTGAGGATAGTGAAAAGTGGGGCAGGATTACATTTCTTTCCCCGGATGCTGCTTTAAGAGCTGCTGAGCTAGATGGTGAAGAGTTTTTTGGCTCTCCTTTGAAAATTTCTCATTCACAAACAGCTTCTGGAGATAAATCATTTTTGTTTCCTGCCGTCAAAGCAAAAATTTTTTGGCCTCGTAGGCTTAGCAAGGGGGTTGCGATAGTTAAATGTGACATAAAGGATGTTGATATCATGTTGAGAGATTTCTATAACCTTTCTATAGGAGGAAGGTATGTACGGTGTGAACCTGGTAGAAAGGATGTGGATAGTGTGGTGATAAGTGGGTTTGACAAGGAGCTCTCAGATGCTGAAATTCTAGATGTAGTAAGAAATGCTACAAGTATAAGGATTTCAGACTTTTTCTTGATTAGAGGAGATGCTGTTGGGAATCCACCAGTCAATGCCTGTGAAGAAGCGCTTCTTAAAGAAATTTCCCCCTTCATGCCCAAGAAAGATCCCCATATTAATTCTTGTCGGGTTCAAGTCTTCCAACCTGAGCCCAGGGATGTATACATGAGAGCTTTAATCACGTTTGATGGAAGACTACATTTAGAGGCAGCGAAAGCTTTAGAGCAAATTGAGGGAAAGGTGTTGCCAGGATGTCTTTCATGGCAGAAGATAAAATGTCAGCGCGTCTTCCATAGCTCGTTGATAGTTCCTCTGCCAGTGTACCGTGTAATTAGGGAAGAATTGGAGAAAATACTTGAAAGCTTCAGTAATTTAAAGGGTCTTGAATGTAGACTGGAAAAGACTTCCAATGGTTCCCAGAGATTGAAAATTACAGCAAATGCCACACAGACAGTAGCAGAAGTTCGGAGACCTTTCGAAGAATTATCAAGAGGGAAAAGAATCGACCACGCCAGCCTCACCCCTGCAGTTGTGCAACTCTTGCTCTCGAGAGAGGGCTTTAATCTCAAAAGCTCATTGCAGCAGGAGACAGGAACTTACATTCTTGTTGACAGGTACAACCTGAGTGTCCGTGTGTTTGGGCCCCCAGACAAGGTTTGCTTGGCTCAGCAGAAACTGATTCAGTCCCTACTCTCTTTCCATGAGGCAAAGCAATTGGAAATCCATCTGAGGGGCCGGGATCTACCTCCTGACTTAATGAAGCAGGTGGTGAAGCAATTTGGACCAGATCTTAGTGGGTTGAAAGTGAAGGTACCTGGGGCAGATCTTGTACTAAACATACGCCGCCAGATAATCTATCTTCGTGGCAACAAGGAGTTGAAACAAAAAGTAGAGGAGTTCATTTTTGAGATCGCGCGTTCTAGTCATCGTGCTGTTGCGGGATTGGGCACGGGACCTAGTTGCCCAATTTGCTTGTGTGAGGTTGAGGATGGATATCTGCTTGAAGGTTGTTGTCACTTATTCTGCCGTTCATGCCTGGTGGATCAATGCGAATCTGCTATAAGAAACCAAGGTACTTTCCCGATATGTTGTGCTCGCGAGGGCTGTGGAGATCCCATTCTGGTCACAGATTTAAAGGCCCTCTTACTGGGTGACAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGATCTTTTGTGGCGTCCAGTGGGGGAACATACAGATTTTGCCCGTCACCTGACTGCCCCTCCGTTTATCGAGTTGCTGATCCTGGGACGGCCGGCGAGCCATTTGTATGCGGGGCATGTTATTCAGAAACTTGTACAAGGTGCCACTTGGAGTATCATCCGTACATATCGTGCGATCAATATCGGGAATTCAAGGACGACCCCGACTCATCGCTGAAGGCATGGTGCAGCGGTAAAGAACATGTTAAGCGGTGCCCATCTTGTGGGTATACAATTGAGAAGGTAGATGGTTGCAACCATATCGAGTGCAAGTGTGGGAAGCATGTGTGCTGGGTTTGCTTGGAATTCTTTGGAAGTAGTGATAATTGCTATGACCATTTGAGAAATATACACATGGCCATCATTTGA 5277 0.4461 MKKTFYHPNATMHHPDYNHRQPPPFRRHFSKPIDFHPNHYRPPGPPNPTAFQAPNFVLHLRRGRRHLRRDLINSIISQCPSKPQSFSIFPYSSDHNYHRCSSSTVDAAILNFLQWVDTLNAVAYLWETRLDGMHDLTPELKSNVMVPSDEDELYSRLRAVFARHVKSLMQEAKELKRWEGESERLTKEIARMEPQKNKHYQVGEFFQMNENKKRFEEEKNLVERRVREFRCAMECLLKLLEEKGGVDEERNEGVNGNYYYDDYDYDAVFRFDGRLNWKRVHSIIMRERRRLEEGLPIYAYRRDILHDIHHQQITVLVGETGSGKSTQLVQFLADSGVGAAESIICTQPRKIAARSLAQRVQEESNGCYEGNAIDSYSTFSSLNEFDSKITFMTDHCLLQHYMADKNLSGVSCIIVDEAHERSLNTDLLLALIKNLLSRRVEMRLIIMSATADAKQLSEYFYGCRIVHVLGRSFPVDVKYVPSDYAGHSESGIASYVSDVVRMAIEIHKTEEEGTILAFLTSQIEVEWACDNFEAVCAVALPLHGKLLPGEQFHVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGLIKDSRYDPGSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEADYQCMEQNQEPEIRRVHLGVAVLRILALGVKNVQEFDFVDAPSQRSIEMAIQNLILLGVIQMKNNVIELTNEGRYLVKMGIEPRLGKLILGCLHHTLGREGIVLAALMANASSIFCRVGSEKDKQRSDCLKMQFCHCDGDLFTLLSVYKEWEGLPRERRNQWCWENSINAKSMRRCQDTILELESCLERELNLVVPSYWRWTPQMPSGCDMYLKRVILSSLPENVAMYSGCKQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFSELLSHSNQYLVCVSAFDFESLHSLDPPPLFDVCNMEKRKLETRTLSGFCCTLLKKFCGKANTNLISLVSRIRKVCEDERISIEVNVDHNDIQLYATSHDMETAVQYVNEVLECEKKWLRTECIEKCLYHGSGFSPIALFGSGAEIKHLELGKRSLSVDVCHPNTDAIEDKQLLMFLEKNTSASVCSVHKYTCTGRDVEDSEKWGRITFLSPDAALRAAELDGEEFFGSPLKISHSQTASGDKSFLFPAVKAKIFWPRRLSKGVAIVKCDIKDVDIMLRDFYNLSIGGRYVRCEPGRKDVDSVVISGFDKELSDAEILDVVRNATSIRISDFFLIRGDAVGNPPVNACEEALLKEISPFMPKKDPHINSCRVQVFQPEPRDVYMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQRVFHSSLIVPLPVYRVIREELEKILESFSNLKGLECRLEKTSNGSQRLKITANATQTVAEVRRPFEELSRGKRIDHASLTPAVVQLLLSREGFNLKSSLQQETGTYILVDRYNLSVRVFGPPDKVCLAQQKLIQSLLSFHEAKQLEIHLRGRDLPPDLMKQVVKQFGPDLSGLKVKVPGADLVLNIRRQIIYLRGNKELKQKVEEFIFEIARSSHRAVAGLGTGPSCPICLCEVEDGYLLEGCCHLFCRSCLVDQCESAIRNQGTFPICCAREGCGDPILVTDLKALLLGDKLEELFRASLGSFVASSGGTYRFCPSPDCPSVYRVADPGTAGEPFVCGACYSETCTRCHLEYHPYISCDQYREFKDDPDSSLKAWCSGKEHVKRCPSCGYTIEKVDGCNHIECKCGKHVCWVCLEFFGSSDNCYDHLRNIHMAII 1758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01178 1758 Pfam Helicase associated domain (HA2) 685 779 IPR007502 GO:0004386
Aip10g01178 1758 Gene3D - 276 471 IPR027417 -
Aip10g01178 1758 SMART ultradead3 293 478 IPR014001 -
Aip10g01178 1758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1546 1625 IPR013083 -
Aip10g01178 1758 ProSitePatterns Zinc finger RING-type signature. 1565 1574 IPR017907 -
Aip10g01178 1758 Coils Coil 212 232 - -
Aip10g01178 1758 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 848 923 IPR011709 -
Aip10g01178 1758 SUPERFAMILY RING/U-box 1548 1610 - -
Aip10g01178 1758 MobiDBLite consensus disorder prediction 1 22 - -
Aip10g01178 1758 CDD SF2_C_RHA 473 632 - -
Aip10g01178 1758 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 106 1504 - -
Aip10g01178 1758 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1580 1674 - -
Aip10g01178 1758 Pfam IBR domain, a half RING-finger domain 1624 1681 IPR002867 -
Aip10g01178 1758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 469 IPR014001 -
Aip10g01178 1758 Pfam DEAD/DEAH box helicase 304 456 IPR011545 GO:0003676|GO:0005524
Aip10g01178 1758 ProSiteProfiles TRIAD supradomain profile. 1545 1758 IPR044066 -
Aip10g01178 1758 SUPERFAMILY RING/U-box 1632 1686 - -
Aip10g01178 1758 Gene3D - 646 689 IPR042035 -
Aip10g01178 1758 ProSiteProfiles Zinc finger RING-type profile. 1549 1591 IPR001841 -
Aip10g01178 1758 SMART ibrneu5 1682 1746 IPR002867 -
Aip10g01178 1758 SMART ibrneu5 1616 1681 IPR002867 -
Aip10g01178 1758 CDD DEXHc_RHA-like 312 468 - -
Aip10g01178 1758 Gene3D - 472 644 IPR027417 -
Aip10g01178 1758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 664 IPR001650 -
Aip10g01178 1758 Pfam Helicase conserved C-terminal domain 504 623 IPR001650 -
Aip10g01178 1758 PANTHER ATP-DEPENDENT RNA HELICASE 1580 1674 - -
Aip10g01178 1758 PANTHER ATP-DEPENDENT RNA HELICASE 106 1504 - -
Aip10g01178 1758 SUPERFAMILY RING/U-box 1703 1750 - -
Aip10g01178 1758 Coils Coil 168 188 - -
Aip10g01178 1758 ProSitePatterns Zinc finger C2H2 type domain signature. 1733 1754 IPR013087 -
Aip10g01178 1758 SMART helicmild6 530 624 IPR001650 -
Aip10g01178 1758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 802 IPR027417 -
Aip10g01178 1758 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 411 420 IPR002464 -
Aip10g01178 1758 Gene3D - 1677 1756 - -
Aip10g01178 1758 SMART ha2_5 684 780 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01178 Aip-Chr10 17220034 17226995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01178 1564 1740 C3H Transcription Factor Family AT2G31770 29.032 1.66e-13 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01178 K12818 - gmx:100810008 2519.96