Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01173 ATGAGGAGGCTGAAGACGGGGGGGATTAAACAGAAGCTGCGTGCGCACATTTGGGTAATAGAGCAGAGGAGGAAGAATAGGAAGGCTTCACGGGAAAACAAGGACAAAAGGCCCTATAGAGGAGTAAGGAGAAGGCCATGGGGTAAATTTGTAGCTAAGATTAGAGACTCAACAAGAAATGGTGTTAGGGTTTGGATTGGAACATTTGACACAGCCGAAGTTGCAACTTTGGCTTTTGAACAAGCTACGTTCACTACAAGAGGTTCCTTGGTAGTTCTCAATTTCCCTGAAGTTGTTTGGGAATCACTGAACAACATTATGGTAAACACTAACAACAACAATAATAAGGAAGAAGGCTCTTCTCCTGTTTTAGCATTCAAAAGGAAACATACTGTGAGGAAAAATTCAACGTCAAAGTCAAAGTCAAATGTGATGATTAGTAATAGCAACAATAACACCAACAACAATAGCAATGAGAAGGTTTTGGTGTTAGAGGATCTGGGTTCTCAGTATCTTGAACAGATTCTGAGTTTGACTTCTTCGGAAGGCATTATTTGCTAG 561 0.4082 MRRLKTGGIKQKLRAHIWVIEQRRKNRKASRENKDKRPYRGVRRRPWGKFVAKIRDSTRNGVRVWIGTFDTAEVATLAFEQATFTTRGSLVVLNFPEVVWESLNNIMVNTNNNNNKEEGSSPVLAFKRKHTVRKNSTSKSKSNVMISNSNNNTNNNSNEKVLVLEDLGSQYLEQILSLTSSEGIIC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01173 186 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 28 179 - -
Aip10g01173 186 MobiDBLite consensus disorder prediction 137 157 - -
Aip10g01173 186 Gene3D AP2/ERF domain 38 98 IPR036955 GO:0003700|GO:0006355
Aip10g01173 186 ProSiteProfiles AP2/ERF domain profile. 38 96 IPR001471 GO:0003700|GO:0006355
Aip10g01173 186 PANTHER DNA-BINDING DOMAIN 28 179 IPR044808 GO:0003700|GO:0009873
Aip10g01173 186 Pfam AP2 domain 39 85 IPR001471 GO:0003700|GO:0006355
Aip10g01173 186 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Aip10g01173 186 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Aip10g01173 186 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Aip10g01173 186 MobiDBLite consensus disorder prediction 131 157 - -
Aip10g01173 186 SMART rav1_2 38 102 IPR001471 GO:0003700|GO:0006355
Aip10g01173 186 CDD AP2 39 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01173 Aip-Chr10 17144747 17145547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01173 34 183 AP2-EREBP Transcription Factor Family AT3G23240 49.007 4.59e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip10g01173 AP2 6.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01173 K14516 - gmx:100780775 175.252