Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01142 ATGAGTTATGGGACTCGAACACCACACCTACTCACACAGCCACCGCAGCCGTCGCCGTCGTTTGGAAGCTCGTTGGCCGTCTCCTCTGTTCGAGCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTCGCCGTTGTGTTTCTGTCACTGCCCTTCCTCCTCGCAGCCGAGTGAGCTTCTTCACCTCAGAGCTTCTTCGATGGCGATGGTTTCTTCTCTCTCTGCGGCACTACTTCCTCCTCTTTCTCTCTCTACCTCTTCCTCCTCGCTCTCTTCCAACCTAAAGTTTTCGGCTTTGTGCTTTCAATCTGGTAACACCTTCAAGCTCAGAACCCCTAAGCTGCTTCACTCATCAACTAGGGTTTATGCCGCGCCTGAAGTTTTGGATTCGGAGGAACCGCTAGACGTACCTCCAGAAACCCTTGGTGATGAATCTGAGGCCACCACCTTTCAGGTTGGAGATTCAGACACTCGTACCACTTCCTCAATTAGCATTGGTGGTGATCCGGATACAATGGCGCCTAAGCAGAAGATTAGAATCAAACTTAGGTCTTACTGGGTGCCCTTGATAGAGGATTCTTGCAAGCAGATACTAGATGCAGCAAGGAATACCAATGCAAAAACCATGGGTCCTGTACCATTGCCAACTAAGAAGAGAATTTATTGTGTTCTTAAATCGCCACATGTACATAAGGATGCTCGATTCCATTTTGAGATCAGAACACATCAGCGTCTCATTGATATTTTGTATCCTACAGCACAAACAATAGATTCTCTGATGCAGCTTGATCTTCCTGCTGGTGTGGATGTAGAGGTCAAGCTCTGA 828 0.4819 MSYGTRTPHLLTQPPQPSPSFGSSLAVSSVRALSLSLSLSVCVSPLCFCHCPSSSQPSELLHLRASSMAMVSSLSAALLPPLSLSTSSSSLSSNLKFSALCFQSGNTFKLRTPKLLHSSTRVYAAPEVLDSEEPLDVPPETLGDESEATTFQVGDSDTRTTSSISIGGDPDTMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01142 275 Gene3D Ribosomal protein S10 domain 169 275 IPR036838 -
Aip10g01142 275 SMART Ribosomal_S10_2 180 274 IPR027486 -
Aip10g01142 275 MobiDBLite consensus disorder prediction 145 168 - -
Aip10g01142 275 PANTHER BNAC05G40270D PROTEIN 71 275 - -
Aip10g01142 275 SUPERFAMILY Ribosomal protein S10 178 275 IPR036838 -
Aip10g01142 275 MobiDBLite consensus disorder prediction 133 171 - -
Aip10g01142 275 ProSitePatterns Ribosomal protein S10 signature. 202 217 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip10g01142 275 TIGRFAM rpsJ_bact: ribosomal protein uS10 177 274 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aip10g01142 275 Pfam Ribosomal protein S10p/S20e 180 274 IPR027486 -
Aip10g01142 275 PRINTS Ribosomal protein S10 family signature 213 228 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aip10g01142 275 PRINTS Ribosomal protein S10 family signature 178 191 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aip10g01142 275 PRINTS Ribosomal protein S10 family signature 234 248 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aip10g01142 275 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 71 275 IPR001848 GO:0003735|GO:0005840|GO:0006412
Aip10g01142 275 Hamap 30S ribosomal protein S10 [rpsJ]. 176 275 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01142 Aip-Chr10 16212725 16215238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01142 177 275 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.000 1.94e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01142 K02946 - gmx:100526953 304.293