Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01140 ATGGGAAAGAAAGGTGGATTGTTTCGTTATGCGGATGGAGTTGACAAATTGCTATTGTTGTTTGGAACTATGGGTTGCATAGGGGATGGGCTACAAACACCTATCACAATGTTTGTTTTTGGGAGTTTGATTGACGATTATGCACGTGGTTCTGGAGATTCTGTTCCTAAGCATATCATAGACAAGTACGCTCTCAAGTTGCTGTATATTTCCATCGGGGTTGCTGTATGTGCTTTTGTTGAAGCAGTATGTTGGACAAGAAGTGCAGAAAGACAAAGTTGTCGCATGAGAATTGAATATCTTAAATCAGTTCTCAAGCAAGATGTTGGCTTCTTTGACAAGCAAGCCGATAGTGATTCTTCAAAGACCTTCCAAGTAATTTCTACCATAACTTCTGATGCCCAAACAATCCAAGACACCATGGCTGAGAAGATACCGAACTGTCTAGTTCACCTCTCAGCATTTTTTTCTAGCTTCATAGTAGGACTCTTCCTCTCATGGAGGCTTGTAATAGCTGCATTTCCATTCTCAATAATGATGATCATGCCAGCAATCATATTTGGGAAGGAAATGAAAGATCTTGGGGAGAAAATGAAGGATGCATATGGCGTAGCAGGGAGCATAGCGGAACAAGCTATCTCGTCGATTCGAACGGTTTATTCATATGTTGCCGAGAAAGAAACACTAAAGAGGTTTAGCTCTGCTCTTGAAAGGAGTATGGAGCTGGGAATAAAGCTAGGGAGAACAAAGGGTGTTGTAGTTGGTAGCTTTGGGTTGCTTTATGCTACTTGGGCATTTCAATCTTGGGTTGGAAGTGTTGTGGTCAGGACTACAGGTGAAAGAGGCGGACTTGTGTTTGCTGCTCAAATTTGCATGATTTACGGAGGACTGTCTCTGATGAATGCACTTCCAAATCTAACTTTCATAGTAGAGGCAAAAGTAGCAACAACCAGAATTTTCCAAATGATTGAGCAAATACCAATCATAAACTCTCACCAACAAAAAGGAAGGATCTTAAGCCATGTGAGAGGAGAAATCACATTCACAAAAATTGACTTCACTTATCCATCACGACCGGACACACCGATTCTCCAAGGACTGGATCTGAAGTTTCCAGCATGTAAAACAATAGGCCTAGTTGGAGGCAGTGGTTCTGGAAAATCCACAATCATCTCTTTGATTGAAAGGTTCTATGATCCTTTATATGGTGAGATATTGCTTGATGGACATGATATAAAGAGGCTTGAGCTTAAGTGGCTAAGGTCACAAATGGGACTTGTTAATCAGGAGCCTATTCTGTTTGCAACATCAATTAGGGAGAATATTCTGTTTGGCAAGGAAGGTGCTTCAATGGAAGCTGTTATAGATGCAGCTAAGGCTGCAAATGCACATGGTTTCATTGTTAAACTTCCTAGTGGATATGAAACTCAAGTGGGACAACTTGGGACTCAGTTATCTGGAGGTCAAAAGCAAAGAATTGCAATAGCAAGGGCCCTAATTCGCAACCCGAAAATCCTACTCCTTGATGAAGCCACAAGTGCATTGGATTCAGAGTCTGAAAGAATAGTGCAAGAGGCCCTTGATTTGGCTTCAAGAGGCAGAACAACAATCATTGTAGCTCATCGCTTATCGACGATTCGAAATGCTGACTGGATAGTAGTCCTTCAATCAGGAAGAGTTGTTGAATCTGGCTCCCATGTTGAGCTACTCAAACTTAACAATGGACAAGGTGGTGCTTATAGCAAAATGCTAAAACTACAACAACAAACAAATCAAAATGAAGATTCAACATTGAATCATGTGAGCAAGAGTCCCCAAGTTATGTCATATTTAACAAGTCCAAGATCAATGCCAGGTACTCCAACTCATCATTCATTCACCTCACCAATATACTCAATCAGTGTTCTGGGGTCCCCTTTTGATGACTACACTGAGAATTCTGAGATAACTTCAAAAGCAAGTTTCTCGCAATGGCGTTTGATAAGAATGAATTCCCCTGAGTGGAAGTATGCTCTGATAGGATGCTTAGGTGCTATTGGCTCTGGAATTTGCCAACCTTTTTACTCTTATTGCCTTGGATTCATTGCTTCTATCTACTTTATAACCGATCACTCGCGCATTGTCTCACAAATCAGGCTGTACTCATCAATTTTCTGCATCATAGCAGTTGTCAACTTCATATCAGGCCTAATTCAGCACTCGAGCTTCGCCATCATGGGCGAGAAATTGCTAAAAAGGGTGCGCGAGAATCTGCTAGAGAAAATCCTTACATTTGAAATAGGATGGTTTGATCAAGAAGATAACAGCAGTGCAGCCATCTGCGCTCGTTTGGCGTTTGATGCAAACTTGGTCAGGTCTCTTGTAGCAGAAAGAATGTCATTACTAGTTCAAGTATTTGTCACTGCCACCCTGGCTTTCGCACTCGGTTTATATGTCTCATGGAAGGTGGCAATGGTAATGATAGCTATGCAGCCCTTGATCATTGCTTGTTTCTATTCCAAATTCATGCTTATGAAAAGTATGTCAGGTAAAGCAAGAAAGGCTCAAAGTGAAGGTAGTCAATTAGCAATGGAAGCTACCATTAACCATAGAACTATTGCTGCATTTTCATCAGAGAAAAGGGTATTGAATTTGTTCAAAAATTCAATGAAAGGACCTCATTTGGAAACCGTAAAGCAATCATGGATTTCAGCTGCAATTTTGTCGTTGTCACAGTTCATAACTACAGCTTCTATAACCTTAACATTTTGGTATGGAGGATTGCTACTAAACAAAAAGATGGTGAATTCAAATGACCTTTTGCAAGTTTTCTTAATACTGATGGGAACTGGAAGACAAATTGCTGAGACAGTAAGCATGACTTCGGACATAGCGAAAAGCGGGAAAGCCGTTAGCTCGATTTTTGCAATTTTGGACAGGAAAACTCAGATTGAACCTGAAGATCCTAGGCTTATGAAGTTCAGAAAGAACAACAACATAAAGGGTCATGTGAAGTTAAAAGATGTGTTCTTTTCATACCCATCAAGGCCAGAACAAATGATCCTAAAGGGTCTTAGTCTTGAAATTGAAGCTGGGAAAACAATTGCATTGGTGGGGCAAAGTGGGTCAGGGAAATCCACTATCATTGGACTAATTGAAAGATTTTATGACCCAATTAATGGATCAATATTTATTGATGGTTGTGACATTAGGGAATTTGATTTGAGAAGTTTGAGGTTACATATTGCATTGGTGAGTCAAGAGCCTACACTCTTTGGTGGAACTATACGTGATAACATTGTGTATGGAAAGATTGATGCATCTGAAGATGAAATAAGAAAGGCAGTGCGTCTTGCAAATGCTCATGAGTTTATAAGTTCAATGAGAGATGGATATGATACATACTGTGGAGAAAGAGGAGTGCAGCTTTCAGGGGGACAAAAGCAAAGAATTGCAATTGCCAGAGCAATACTAAAGAACCCATCAATCCTTCTCATGGACGAAGCAACAAGTGCTCTCGACAGCGTTTCAGAGAATCTAGTGCAAGATTCCCTGGAGAAAATGATGGTTGGAAGAACATGTGTGGTTATTGCTCATCGTTTGTCTACAATTCAGAATGTGGACACCATTGCTGTGATCAAGAATGGGAAATTGGTGGAGCAAGGTTCACACTCCCAGTTAATGAATGTTGGAACAAAGGGTGCTTACTACTCCATGATTAGAACTCTGAACTTTGACCAACACAACCAAATGGCCTTCTTGCTTAACAAGACCACCATTGCTTCCCATTTCCGATCTCACTCCCAGAAGGGTGAAGATCTGCTTTCACTCTCGCGCCGTCAATACCATATCGAACCTGGGCCTCGTGAAAAAGCGCTCTTGGCTGAAGATGCAGCTTTGAAGCCATTTAAGTCATATAAACAGAGGGTTAAGAAGCTCAAAAAGATTGGCGATATTCTAACAATTGTTGTCGTTGCAGGATGCTGCTATGAAATATATGTCAAGGCAGCTATGAGAGAAGCAGCTCGGAAACAGTAA 4017 0.4085 MGKKGGLFRYADGVDKLLLLFGTMGCIGDGLQTPITMFVFGSLIDDYARGSGDSVPKHIIDKYALKLLYISIGVAVCAFVEAVCWTRSAERQSCRMRIEYLKSVLKQDVGFFDKQADSDSSKTFQVISTITSDAQTIQDTMAEKIPNCLVHLSAFFSSFIVGLFLSWRLVIAAFPFSIMMIMPAIIFGKEMKDLGEKMKDAYGVAGSIAEQAISSIRTVYSYVAEKETLKRFSSALERSMELGIKLGRTKGVVVGSFGLLYATWAFQSWVGSVVVRTTGERGGLVFAAQICMIYGGLSLMNALPNLTFIVEAKVATTRIFQMIEQIPIINSHQQKGRILSHVRGEITFTKIDFTYPSRPDTPILQGLDLKFPACKTIGLVGGSGSGKSTIISLIERFYDPLYGEILLDGHDIKRLELKWLRSQMGLVNQEPILFATSIRENILFGKEGASMEAVIDAAKAANAHGFIVKLPSGYETQVGQLGTQLSGGQKQRIAIARALIRNPKILLLDEATSALDSESERIVQEALDLASRGRTTIIVAHRLSTIRNADWIVVLQSGRVVESGSHVELLKLNNGQGGAYSKMLKLQQQTNQNEDSTLNHVSKSPQVMSYLTSPRSMPGTPTHHSFTSPIYSISVLGSPFDDYTENSEITSKASFSQWRLIRMNSPEWKYALIGCLGAIGSGICQPFYSYCLGFIASIYFITDHSRIVSQIRLYSSIFCIIAVVNFISGLIQHSSFAIMGEKLLKRVRENLLEKILTFEIGWFDQEDNSSAAICARLAFDANLVRSLVAERMSLLVQVFVTATLAFALGLYVSWKVAMVMIAMQPLIIACFYSKFMLMKSMSGKARKAQSEGSQLAMEATINHRTIAAFSSEKRVLNLFKNSMKGPHLETVKQSWISAAILSLSQFITTASITLTFWYGGLLLNKKMVNSNDLLQVFLILMGTGRQIAETVSMTSDIAKSGKAVSSIFAILDRKTQIEPEDPRLMKFRKNNNIKGHVKLKDVFFSYPSRPEQMILKGLSLEIEAGKTIALVGQSGSGKSTIIGLIERFYDPINGSIFIDGCDIREFDLRSLRLHIALVSQEPTLFGGTIRDNIVYGKIDASEDEIRKAVRLANAHEFISSMRDGYDTYCGERGVQLSGGQKQRIAIARAILKNPSILLMDEATSALDSVSENLVQDSLEKMMVGRTCVVIAHRLSTIQNVDTIAVIKNGKLVEQGSHSQLMNVGTKGAYYSMIRTLNFDQHNQMAFLLNKTTIASHFRSHSQKGEDLLSLSRRQYHIEPGPREKALLAEDAALKPFKSYKQRVKKLKKIGDILTIVVVAGCCYEIYVKAAMREAARKQ 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01140 1338 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 319 - -
Aip10g01140 1338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g01140 1338 CDD ABC_MTABC3_MDL1_MDL2 346 587 - -
Aip10g01140 1338 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 997 1233 IPR003439 GO:0005524
Aip10g01140 1338 SUPERFAMILY ABC transporter transmembrane region 7 325 IPR036640 GO:0005524|GO:0016021
Aip10g01140 1338 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 346 582 IPR003439 GO:0005524
Aip10g01140 1338 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 1236 IPR039421 -
Aip10g01140 1338 Pfam ABC transporter 364 513 IPR003439 GO:0005524
Aip10g01140 1338 Gene3D ABC transporter type 1, transmembrane domain 66 968 IPR036640 GO:0005524|GO:0016021
Aip10g01140 1338 CDD ABC_MTABC3_MDL1_MDL2 997 1234 - -
Aip10g01140 1338 Pfam ABC transporter 1015 1164 IPR003439 GO:0005524
Aip10g01140 1338 Gene3D - 344 600 IPR027417 -
Aip10g01140 1338 SMART AAA_5 373 573 IPR003593 -
Aip10g01140 1338 SMART AAA_5 1024 1210 IPR003593 -
Aip10g01140 1338 PANTHER OS04G0481700 PROTEIN 11 1236 - -
Aip10g01140 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 587 IPR027417 -
Aip10g01140 1338 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 991 1234 IPR027417 -
Aip10g01140 1338 Pfam ABC transporter transmembrane region 672 940 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g01140 1338 Pfam ABC transporter transmembrane region 22 277 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g01140 1338 ProSitePatterns ABC transporters family signature. 485 499 IPR017871 GO:0005524
Aip10g01140 1338 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 311 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip10g01140 1338 ProSitePatterns ABC transporters family signature. 1136 1150 IPR017871 GO:0005524
Aip10g01140 1338 SUPERFAMILY ABC transporter transmembrane region 659 979 IPR036640 GO:0005524|GO:0016021
Aip10g01140 1338 CDD ABC_6TM_Pgp_ABCB1_D2_like 661 977 - -
Aip10g01140 1338 Gene3D - 983 1239 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01140 Aip-Chr10 16190501 16203105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01140 7 1244 Calmodulin-binding Proteins AT2G36910 43.360 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01140 K05658 - gmx:100804664 1900.18