Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01087 ATGGACAATAATAATGGTTGCTTCTCTTCACCAAGACGTGATGCTTTTCCAGCAGGTCTAAGAGTCCTTGTTGTTGATGATGACCCAACATGGCTTAGGATCCTTGAAAAGATGCTCAAGAAGTGTTCCTATGAAGTGACAACGTGTTGTTTGGCGAGGCATGCTCTACACTTGCTTCGCGAAAGGAAAGACGGGTATGATATAGTGATCAGCGATGTGAACATGCCGGACATGGATGGATTCAAACTTCTAGAGCATGTTGGACTTGAGATGGATCTTCCTGTGATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACACGGAGCATGCGATTATCTGCTTAAGCCTATAAGGATGAAGGAACTGCGAAACATATGGCAGCATGTCTTTAGGAAAAGGATACACGAGGCGAGAGAATTCGAGAGTTTTGAAGGTTTCGAGAGCATTCACCTGATGAGAAACGGATTGGAGCAATGCGATGATGGGAACCTGTTTGCCCTTGAAGACATGACCTCAACTAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAGAGAATTGATAGATCCATCATCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCACCAGAAGTTTGTTAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCAAAGAAAATACTAGATCTCATGAATGTTCCTTGGCTGACTAGAGAAAATGTTGCAAGCCACTTGCAGAAGTATCGCCTTTACCTAAGCCGGCTTCAGAAAGAGAACGATCTGAAGTCTCACTCAATCGGAATGAACTCGGATTTAGCCTCAACAGATCTAGGGAGTCTTGTTGGAGTTCAGAACTCAGGGAGCAAGAAACAAAATGACGTTTCAATTGACAGCTGCAGTTATTCAGAAGGAGCACTGCAACTTCAGAACCTGGAAACCAAAACTCATGAAGGTAGCAGTGATCCAAACGGAACTATTTCTCCGCCTGCCACCACAGAAAAAGGAAGAACTATGATCAGAAACTTTGTTTCCGAGAAAAAGATGAGAAAGAACCAACCTTTTGACTCTCTTGAGCCGGAAGGAAACCACACGGCAGTAATTGATTGCTCCATTCCAACACAATTCTCTTGGAATGAAGTTCCAGAAATTCAACTCAAAGATCACAAGCCACTTGTTCAGTTAGAGGGTAACTTAAGCCACAAGTTTCCAGTAACAGGTAAGAAGCACCAAATCCAAGTTGATCATCAATCACCATCAATTGGTTCGATTAGTTCTCCATCTTTGACAGGGGAGGAGGTCACGGCATGCATCAAAACAAAACCTTTGTGTGCAGATTACAAGTGTGAATATAAGAGTTCTGTGAGTTCGATAGGATCGGCCGTTGACAACAACACGTTCCCTATCGAACCAGGAAGCCTTATGATGAATGATCCATCAACAGCACCAATTTCAACTACAAATTTGGGATTGAAAACACAAGCATCTAACCTCAACAGCATTTCGGATATGGAATTTTGCCAGAGAAACCTACTTTTGGATGCAGTTTCGCTACCCTTGGACGATGATCTGCATTTTAATTGGCTACATGGGGAATGCTCTAACATCAACTTCAGCCTGCAGAACATAGGGTATTATGATCCAGGGCTTATTGCAGAAATTCCAACTCATTACTATGATTCAGCAGCAGATTATTCAGTCATAGATCAAGGTCTATTCATATCATGA 1740 0.4207 MDNNNGCFSSPRRDAFPAGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLARHALHLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFEGFESIHLMRNGLEQCDDGNLFALEDMTSTKKRKDADNKHDDRELIDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDLKSHSIGMNSDLASTDLGSLVGVQNSGSKKQNDVSIDSCSYSEGALQLQNLETKTHEGSSDPNGTISPPATTEKGRTMIRNFVSEKKMRKNQPFDSLEPEGNHTAVIDCSIPTQFSWNEVPEIQLKDHKPLVQLEGNLSHKFPVTGKKHQIQVDHQSPSIGSISSPSLTGEEVTACIKTKPLCADYKCEYKSSVSSIGSAVDNNTFPIEPGSLMMNDPSTAPISTTNLGLKTQASNLNSISDMEFCQRNLLLDAVSLPLDDDLHFNWLHGECSNINFSLQNIGYYDPGLIAEIPTHYYDSAADYSVIDQGLFIS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01087 579 MobiDBLite consensus disorder prediction 318 337 - -
Aip10g01087 579 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Aip10g01087 579 Gene3D - 20 201 - -
Aip10g01087 579 Gene3D - 202 261 - -
Aip10g01087 579 Pfam Response regulator receiver domain 22 131 IPR001789 GO:0000160
Aip10g01087 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 556 IPR045279 GO:0009736
Aip10g01087 579 SMART REC_2 20 132 IPR001789 GO:0000160
Aip10g01087 579 CDD REC_typeB_ARR-like 22 136 - -
Aip10g01087 579 SUPERFAMILY CheY-like 19 148 IPR011006 -
Aip10g01087 579 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
Aip10g01087 579 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Aip10g01087 579 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Aip10g01087 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01087 Aip-Chr10 14704971 14708622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01087 14 316 Response Regulator Gene Family AT2G25180 49.673 1.97e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aip10g01087 Response_reg 3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01087 - K14491 gmx:100797421 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01087 10 14704971 14708622 Aip10g01087 10 14704971 14708622 ECH
Aip10g01087 10 14704971 14708622 Aip03g04925 03 133841403 133843681 PCT