Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01084 ATGGCATCTTTCAAAGAAGATCATGGGAAGACACTCATTCCTTCAAGGAAGCCTCAGACAGTGATTGTTGCAAGGAGGCCGGATTCCGGTGGGAAAGAAGGTTCTGTCATCTCTCTTCTAGCCAACCACTTTTTGGTGCAGTTCGATTCATCGCAGAAGATATATCATTACAATGTTGAGATCACTCCGCATCCCTCCAAGGAAGTTGCAAGAGCAATCAAACAGAATTTGGTAGATAGAAATTCTGATCTACTCTCCGGTGCTTTGCCGGCATATGATGGAAGGAAGAACCTGTATAGTCCGGTCGAGTTCCAAAACGATAAGCTTGAATTCTACATAAGCCTTCCAATTCCCACAAGCAAATTGTCATCAAATTATGGAGATGTGTATGACTCGAAAGAGAAGCATGAAAAACTCAAATTGTTTAGGATCAATGTCAAACTAGTCTCCAAGATCAATGGGAAGGAGCTAAGTAGTTACTTGAGCAAAGAGGGTGATGATTGGATTCCCCTTCCACAGGATTATCTCCATGCTTTAGATGTGGTTCTGAGGGAAAGTCCGACCGAGAAATGCATACCTGTAGGAAGGTCTTTCTACTCGAATTCGATGGGAAGAAGCAAAGATATTGGTGGTGGAGCTGTTGGACTGAGAGGTTTCTTTCAGAGTCTTAGACCAACCCAACAAGGACTTGCTCTAAATGTAGATTTCTCAGTAACTGCTTTCCATGAAAGCATAGGAGTGATACCATACTTGCAGAAACGGCTCGAGTTTCTCCGAGACCTTTCTCAAAAGAAGACAGCACAATTAACTGCTGAAGAGAGGAAGGAAGTGGAAAAGGCATTGAAGAACATCAGGATCTTTGTTTGCCATAGAGAAACAGTTCAAAGGTACCGAGTCTATGGCTTAACTGAGGACATTACTGAAAATCTCTGGTTTGCAGACAGAGATGGAAGGAATCTGAGGCTTTTGACTTACTTCAAAGATCACTATAACTATGATATACAATTTAGGAAACTTCCATGCTTGCAAATTAGCAGGAGTAAGCCTTGTTATCTCCCTATGGAGCTTTGTGTGATCTGTGAAGGCCAGAAGTTCCTCGGAAAACTCTCCGATGATCAAACAGCAAGAATTCTCAAGATGGGGTGCCAAAGACCAGGGGAAAGGAAAACCATCATTGAAGGAGTCATGCGAGGGCAAGTTGGACCCACCAGTGGAGACCAGGAAAGAGAATTCAAACTCAACGTCTCAAGAGAAATGACAAGATTAACTGGGAGAATTCTCCACCCTCCAAAGCTGAAGCTAGGAGAGGGAGGTCATGTGAGGAACCTCACTCCTTCGCGGCATGATCGGCAGTGGAACCTGCTCGATGGCCATGTTTTTGAAGGGACTAAAATCGAAAGGTGGGCGCTCATGAGTTTTGGTGGTACCTCCGAGCAGAAGTCCAATATCCCCAGATTCATAAACCAGTTAACTCAAAGATGTGAACAACTGGGAATTTATCTCAACAAGAACACCGTTATTAGCCCCCAATTTGAATCAAGCCAGGTTCTCAACAATCCCCTCCTTCTGGAATCAAAGCTCAAGAAAATACAGAGGAGCGCCTCAAACAACCTCCAGCTTCTGATCTGCATAATGGAGAGAAAACACAAAGGGTATGCTTTCTTGAAGAGAATAGCCGAGACGAGTGTTGGCGTTGTAAGCCAGTGCTGCCTGTATCCGAATCTGAGCAAGTTAAGTTCACAGTTCTTGGCAAATTTGGCCCTCAAAATCAATGCCAAAGTTGGTGGATGCACGGTTGCTCTCTACAACTCGCTGCCTTCTCAGATACCTCGCCTCTTCCAGATTGACGAGCCGGCAATTTTTATGGGAGCCGACGTAACACATCCTCACCCTCTTGATGATTTTAGTCCATCCGTTGCAGCTGTTGTTGGCAGCATGAATTGGCCAACAGCAAACAAGTACATTTCAAGAATACGGTCTCAAACACACAGACAAGAAATCATCCAGGATCTTGGCGCAATGGTTGGTGAGTTGCTGGAAGATTTCTACCAGGAAGTAGAGAAACTCCCCGGTCGTATAATCTTCTTTCGTGACGGTGTCAGTGAGACTCAATTCTACAAAGTGCTGCAAGAGGAACTACAATCCATCAGAACAGCATGTTCAAGGTTCCAGGATTACAAACCTCTCATTACTTTTGCCGTCGTGCAGAAGAGGCACCACACAAGGTTGTTTCCCTTTGAACTTGACCAATCCTCAACTCAGAACCATTTCTTGTATGAAAACATCCCTCCAGGGACCGTGGTAGATTCCGTGATCACTCATCCGAAGGAATTCGATTTCTACCTATGCAGCCATTGGGGTGTTAAAGGAACGAGCAGGCCAACACATTACCATGTTTTGTGGGATGAAAACCAATTCACCTCAGATGAACTTCAGAAGCTAGTTTACAATTTGTGCTACACCTTTGTTAGGTGCACCAAACCAATTTCTTTGGTTCCTCCTGCATATTATGCACATTTAGCTGCATATAGAGGAAGACTCTACCTTGAGAGATCTTCAGAATCATTAGGTTTGTTCAAAGGTTCATCAACATTATCAAGAGCTGCTCCTCCAAAAACAGCACCATTACCTAAACTTAGTGAAAATATCAAGAAGCTAATGTTCTATTGCTAG 2673 0.4388 MASFKEDHGKTLIPSRKPQTVIVARRPDSGGKEGSVISLLANHFLVQFDSSQKIYHYNVEITPHPSKEVARAIKQNLVDRNSDLLSGALPAYDGRKNLYSPVEFQNDKLEFYISLPIPTSKLSSNYGDVYDSKEKHEKLKLFRINVKLVSKINGKELSSYLSKEGDDWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSNSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLSQKKTAQLTAEERKEVEKALKNIRIFVCHRETVQRYRVYGLTEDITENLWFADRDGRNLRLLTYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGKLSDDQTARILKMGCQRPGERKTIIEGVMRGQVGPTSGDQEREFKLNVSREMTRLTGRILHPPKLKLGEGGHVRNLTPSRHDRQWNLLDGHVFEGTKIERWALMSFGGTSEQKSNIPRFINQLTQRCEQLGIYLNKNTVISPQFESSQVLNNPLLLESKLKKIQRSASNNLQLLICIMERKHKGYAFLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPSQIPRLFQIDEPAIFMGADVTHPHPLDDFSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVGELLEDFYQEVEKLPGRIIFFRDGVSETQFYKVLQEELQSIRTACSRFQDYKPLITFAVVQKRHHTRLFPFELDQSSTQNHFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSSESLGLFKGSSTLSRAAPPKTAPLPKLSENIKKLMFYC 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01084 890 CDD PAZ_argonaute_like 247 360 - -
Aip10g01084 890 CDD Piwi_ago-like 409 849 IPR045246 -
Aip10g01084 890 PANTHER PROTEIN ARGONAUTE 7 16 889 - -
Aip10g01084 890 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 16 889 - -
Aip10g01084 890 ProSiteProfiles PAZ domain profile. 252 361 IPR003100 GO:0005515
Aip10g01084 890 SUPERFAMILY Ribonuclease H-like 525 850 IPR012337 -
Aip10g01084 890 SMART DUF1785_2 192 244 IPR014811 -
Aip10g01084 890 ProSiteProfiles Piwi domain profile. 540 850 IPR003165 GO:0003676
Aip10g01084 890 SMART Piwi_a_2 540 850 IPR003165 GO:0003676
Aip10g01084 890 SMART PAZ_2_a_3 252 383 IPR003100 GO:0005515
Aip10g01084 890 Gene3D paz domain 238 365 - -
Aip10g01084 890 Pfam PAZ domain 255 377 IPR003100 GO:0005515
Aip10g01084 890 Pfam Piwi domain 541 847 IPR003165 GO:0003676
Aip10g01084 890 Gene3D - 426 602 - -
Aip10g01084 890 Gene3D - 612 890 IPR036397 GO:0003676
Aip10g01084 890 Pfam N-terminal domain of argonaute 37 183 IPR032474 -
Aip10g01084 890 Pfam Argonaute linker 1 domain 193 242 IPR014811 -
Aip10g01084 890 SUPERFAMILY PAZ domain 239 397 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01084 Aip-Chr10 14592002 14596449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01084 31 890 Eukaryotic Initiation Factors Gene Family AT1G48410 42.146 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01084 K11593 - gmx:100797755 1645.94