Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01079 ATGTCAAACATGCTTAAGCGCAAATTAGAGGAGGAGCAACCTATCATGGATAATAATAATCCAGAGTTGTTGCTTACCCTGAGCCTCAACCTGGAAAGGGTTGATGAACCATCTTCCAATAATAACTGCTCCGCAGGTGTGGAAAATCGCCCTAAGCAGCAACGATTATTTCCTTGCAAATTCTGTTACAAGAAGTTTGCGAGTTCTCAAGCTTTGGGAGGACATCAAAATGCTCACAAGCGAGAGAGGATGCTCTCAAGAATGAACAAAGTGTTTAACATGGGAGCGATTGAGCTTGGTCCTCGTCACTTCTGTCCTTACTCAAACATGCCAAATCATCTTCTTCCCTTTCGTGGGTCATTTCCTGTTTATCATCAAGGTGCACACATGCACCACATGGTTCATATGCCTTCTTCCACCATGACCATGCCTTTTCCTCGTTTTGGATCTAACTTTGGAAACTAA 465 0.4323 MSNMLKRKLEEEQPIMDNNNPELLLTLSLNLERVDEPSSNNNCSAGVENRPKQQRLFPCKFCYKKFASSQALGGHQNAHKRERMLSRMNKVFNMGAIELGPRHFCPYSNMPNHLLPFRGSFPVYHQGAHMHHMVHMPSSTMTMPFPRFGSNFGN 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01079 154 Pfam C2H2-type zinc finger 57 81 - -
Aip10g01079 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Aip10g01079 154 SUPERFAMILY beta-beta-alpha zinc fingers 54 84 IPR036236 -
Aip10g01079 154 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Aip10g01079 154 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 145 IPR044246 GO:0009788
Aip10g01079 154 Gene3D Classic Zinc Finger 39 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01079 Aip-Chr10 14554882 14555346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01079 3 153 C2H2 Transcription Factor Family AT5G25160 33.333 2.59e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01079 - - aip:107620206 313.153