Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01054 ATGGAAGAGGAAATCAAGTCAGAATTCAGAAAAGCCGGGTTCAACCTTGAGGAAGAAGAAGAAATACTGAACAAGTGTATGACTTTCTGCATCAACTACAGCCTCAGCCCTGCAGATCTCGTCTCAAACTGGGAGGTTTATTACCTCAACAGACAACTGAATGAGCCAACAGTGCAAAATGCTGAAATGGATGGCTTTTTGATGCACCTGCAGACTAACAAGAAAGAAGAAGTTATAAAGGAGGAATCTAATTTGCATAGTTACTCTATCAGAGATGTAGAAATGGTCTTAAATAATGATGATGATGCTAAGTTTAGTACTCCTGGGACTCCAACAAATAATGATGAACATCTTCGTTCACCTGCACACGAAGCAATGTCTCTAACACATGGGAATATTTTATCTTCTGGAAAACCAACTGAGCTGGTGACACCCTTTTCAAAGCGAACTGATAGGTTTGCTGTGAAATTTAGCATCAACACAGTGCCTGATATAGAGAATGAAATACAAGTGCCGAATCATGAGATCGATGAGGATGATGTTATTAGGAAAGTTATGCCTTGTAAAAGGTGTTCATTGGTGGTTCATGGATCAGGGCCTAAACGTGGTTGCAGATTCATGCATGATAGGACAGAGGATAGGATGAATGTAATAGAAAATCGAATTCGCAAACATACAAGGGCCCTTGTTGCTTCTGGGATTTATGGAGAACCAACAGACCCTACAATTGCTTCACAGAGAAGCATTTTTGCTGTCGGTATGGTTTGCTGTGATGCAGAAGGCCGTCTAAATGACAAGTCTGTCATGCTGCAGGGCAGTGTTGAACATTCTGGAGGAGAATGTGTTCGTCTGGACTTGCAACGCTTAAGCCATTTTTCAATTTTCCCTGGGCAGGTTGTTGGTATTGAAGGGCATAATCCTAGTGGGCATTGCTTAGTTGCATCTAAATTGGTAGATTCTATACCACCTACCTCTGTTGCTGATGATAAGGATTTGAATCCAGCAAAGAAGCTAGCTATTGATAAAAGTCAACCAATTGATATTACTTCTAAAAAGACAGAGTTGTCCATGATTATTGCAGCAGGCCCTTTTACAACAACAGACAATTTATTTTTTGAGCCCCTTGTAGAATTGTTAGCATATGCAAAGCGAAGACAGCCACAGTTACTCGTATTGTTGGGACCATTTGTTGATTCTGAACACTCCAACATTAAGAAAGGAACCGTTGACAGAACCTTTGATGAAATATTTCATAACGACATCCTGAGCAAGTTACAAGATTATGTAGAATGTATGGGTGCTGCTGCACGTGTTCTTCTTGTACCATCTATACGAGATGCGAACCATGATTTTGTTTTCCCTCAGGTACAGATAGAATTTAATCAACTAAGATATGAGTTACCATTTGTTATTGCTTTTCAGGTCAAAGTTGGTTGCTGCAGTGTAGATATTCTCAAGCAGATCAGTGGGGAAGAGATATCACGAACTGCGCCAGATGGACAACCTACTGATCGCTTGAGTAGGCTTGCAAATCATATTCTTAGCCAGCAAAGCTTTTATCCACTTTATCCGCCGGCAGAAGGTGTTCCTTTGGATTTTTCTCTTGCACCAGAAGCCCTTCAACTCCCGTTGGTTCCAGATCTTCTTATCTTGCCTTCGGATATCAAGTACTTTGTCAAGGTGCTTAATGTGGGAAGTGAAGAGACAAACTGCAAGAAATGCATTGCTGTGAATCCAGGAAGACTAACAAAGGGAGAAGGAGGGGTCAGGAGGTATCCTGTATCCACTAGTAGAAGCAATCTTATTTTTGGCTCAGTCAGAATTTGA 1827 0.41 MEEEIKSEFRKAGFNLEEEEEILNKCMTFCINYSLSPADLVSNWEVYYLNRQLNEPTVQNAEMDGFLMHLQTNKKEEVIKEESNLHSYSIRDVEMVLNNDDDAKFSTPGTPTNNDEHLRSPAHEAMSLTHGNILSSGKPTELVTPFSKRTDRFAVKFSINTVPDIENEIQVPNHEIDEDDVIRKVMPCKRCSLVVHGSGPKRGCRFMHDRTEDRMNVIENRIRKHTRALVASGIYGEPTDPTIASQRSIFAVGMVCCDAEGRLNDKSVMLQGSVEHSGGECVRLDLQRLSHFSIFPGQVVGIEGHNPSGHCLVASKLVDSIPPTSVADDKDLNPAKKLAIDKSQPIDITSKKTELSMIIAAGPFTTTDNLFFEPLVELLAYAKRRQPQLLVLLGPFVDSEHSNIKKGTVDRTFDEIFHNDILSKLQDYVECMGAAARVLLVPSIRDANHDFVFPQVQIEFNQLRYELPFVIAFQVKVGCCSVDILKQISGEEISRTAPDGQPTDRLSRLANHILSQQSFYPLYPPAEGVPLDFSLAPEALQLPLVPDLLILPSDIKYFVKVLNVGSEETNCKKCIAVNPGRLTKGEGGVRRYPVSTSRSNLIFGSVRI 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01054 608 Coils Coil 208 228 - -
Aip10g01054 608 Gene3D - 339 598 - -
Aip10g01054 608 Pfam DNA polymerase alpha subunit B N-terminal 21 225 IPR013627 -
Aip10g01054 608 PIRSF DNA_pol_alpha_2 1 601 IPR016722 -
Aip10g01054 608 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 588 IPR016722 -
Aip10g01054 608 Gene3D - 1 74 IPR043034 -
Aip10g01054 608 Pfam DNA polymerase alpha/epsilon subunit B 358 560 IPR007185 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01054 Aip-Chr10 13933734 13938682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01054 2 588 Core DNA Replication Machinery Family AT1G67630 56.187 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01054 K02321 - gmx:100795306 829.32