Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01024 ATGGATGTTGCTGAGCTTGAAGAAAATCTTTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAGGACTCTTTCTGCAATATATTGTAAAATATTGACAATATTTCCTTCTCTAGAAGCAGCTAAGCCTAGGAGCAAATCTGGAATACAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGTCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCAATAACTGGCGACGCCGTACTTCAAAAATTTGAAAAGGCTAAGTCTGCACTTGTTGACAGTCTTAAACTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGCAGGTTGAGAAAATTGTGGATGAACTTGCAAGTACGGTTTTTGCAATTGACCCCTCAGAAAAACAAGTTGGCGACGATTTAATTGCATTGCTTCAGCAGGGAAAGAAGCTTGACAACTCTAATGACAGTAGTGAACTTGAATGTTTTCATCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGCAGCTCTTACTGAACGAAGAGCTCTCAAAAAACTCATCGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTCATGAGGAAATATTCTAAGTTGTTTAGAAGTGAGTTCTCAGATGATAATGATTCTCAGGGCTCCCAACCCTGTTCACCTACTGTTAATGGATATGTTGAGGATGGTGTTCAGACTCAAGCGTTTGATAGAGTGTTTTCAAAACTTAGTTCCATTAACTTAAAGCCGAATAATAGAAAATCAGGCCCGATGCCCCTTCCCCCTGAAGAGTTGAGGTGTCCGATATCTCTGCAACTCATGAGTGATCCTGTTATAATTGCTTCGGGTCAAACATACGAAAGGGCTTGTATAGAAAAATGGTTCAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTCCACATCTTTTATTGACTCCTAATTACAATGTCAAGAATCTTGTGGCTAGTTGGTGCGCACAGAATGGAATTCCTATTCCTGAAGGCCCTCCCGAATCTCTTGATTTTAACTATTGGAGATTGGCTTTATCAGATACCGATTCCACAAATTCAAAATCTGTTAACAGTGTAAATTCTTGCAAGTTGAAAGGTGTGAAAGTGGTTCCAGTAGAAGAGAGCAGCATGTCAGAGCAAACTGGCGTAGCTGGAGCTGAAAGTGTGTCTACACAAGAGGACGATAATGAACAGTATCTTAGTTTTCTGAAAGTCTTAACAGAAGGGAACGATTTACAGGGGAAGTGTAAGGTTGTACAAAGGTTAAGGATGTTGCTAAGGGATGATGAGGACGCCAGGACATTTATGGGTGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTCCAATCAGCTTTGCATGAAGGAAATGCAATGGATCAAGAAAATGGAGCTATGGCCCTGTTCAACCTTGCTGTGAACAATGACAGAAACAAGGAAATGATGATATCAGCCGGAGTCTTATCCTTGTTGGACGAAATGATCTATAAACCTACTTGCTATGGCTGTGCAACTGCCCTCTATCTAAATCTCTCTTGCCTTGAAGAAGTCAAGCCTATGATTGGTTCGGGTCAGGCTGTCCCATTCCTAGTCAAGATTCTTAAATCCAGCTCTGATGTTCAATGCAAGCTAGATTCGCTCCACACACTCTATAATCTTTCTACCGTACCCACCAACATTCCATACCTCCTTTCATCTGGAATCATTGTTGGCTTGCAATCCCAGCTTGTAGGCCAGGGTGATAGTGTGTGGACCGAAAAATGCATAGCTGTATTGATAAATTTGGCGGTTTCTCAACTGGGTAGAGAGGAAATGGTGTCATCTCCAGCAATCATAAGCACATTGGCATCGATACTCGACACTGGTGAGCTCCTAGAGCAAGAGCAAGCCGTCGCATGTCTCCTAATTTTGTGTAACCGGAGCAAGAAATGTTGCGAGATGGTCCTTCAAGAAGGGGTCATCCCTGCCTTGGTCTCAATATCGGTGAATGGGACGTCAAGAGGCAGAGAAAAATCACGGCAAGAAGAGCATTCCCCGACCAAGCCACAAGGCCGACCAGAAACCAGCAATTCATCTATGCCTAAGCCTGAGATGAAACCACTATGCAAATCTACATCTAGGAGAAAGCTGCCAGCGTTTAGATTGCCGTTGTCAGCTACTGGACCGTTGCTGGAAAGTCATTGGCAGCCATCGGTGCATGTTCTACGGCAATGTGGACATGAACCAAGCAAAGCATGGAGATGTTTTGTTTATACACCCAAAATTGAGTCTGGAGAACTTGGAGAAATGAGCTTCAGATATTGA 2373 0.4282 MDVAELEENLFAASDAKLHGEMCRTLSAIYCKILTIFPSLEAAKPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDAVLQKFEKAKSALVDSLKLVEDIVPQSIGCQQVEKIVDELASTVFAIDPSEKQVGDDLIALLQQGKKLDNSNDSSELECFHQAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVNGYVEDGVQTQAFDRVFSKLSSINLKPNNRKSGPMPLPPEELRCPISLQLMSDPVIIASGQTYERACIEKWFSDGHNTCPKTQQKLPHLLLTPNYNVKNLVASWCAQNGIPIPEGPPESLDFNYWRLALSDTDSTNSKSVNSVNSCKLKGVKVVPVEESSMSEQTGVAGAESVSTQEDDNEQYLSFLKVLTEGNDLQGKCKVVQRLRMLLRDDEDARTFMGANGFVEALMQFLQSALHEGNAMDQENGAMALFNLAVNNDRNKEMMISAGVLSLLDEMIYKPTCYGCATALYLNLSCLEEVKPMIGSGQAVPFLVKILKSSSDVQCKLDSLHTLYNLSTVPTNIPYLLSSGIIVGLQSQLVGQGDSVWTEKCIAVLINLAVSQLGREEMVSSPAIISTLASILDTGELLEQEQAVACLLILCNRSKKCCEMVLQEGVIPALVSISVNGTSRGREKSRQEEHSPTKPQGRPETSNSSMPKPEMKPLCKSTSRRKLPAFRLPLSATGPLLESHWQPSVHVLRQCGHEPSKAWRCFVYTPKIESGELGEMSFRY 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01024 790 SMART arm_5 452 496 IPR000225 GO:0005515
Aip10g01024 790 SMART arm_5 536 578 IPR000225 GO:0005515
Aip10g01024 790 SUPERFAMILY RING/U-box 275 352 - -
Aip10g01024 790 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Aip10g01024 790 MobiDBLite consensus disorder prediction 688 727 - -
Aip10g01024 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
Aip10g01024 790 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 509 IPR000225 GO:0005515
Aip10g01024 790 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 696 - -
Aip10g01024 790 Pfam U-box domain 278 347 IPR003613 GO:0004842|GO:0016567
Aip10g01024 790 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Aip10g01024 790 Coils Coil 176 196 - -
Aip10g01024 790 Gene3D - 424 699 IPR011989 -
Aip10g01024 790 MobiDBLite consensus disorder prediction 691 705 - -
Aip10g01024 790 CDD RING-Ubox_PUB 281 323 IPR045210 -
Aip10g01024 790 PANTHER U BOX DOMAIN-CONTAINING 1 696 - -
Aip10g01024 790 SUPERFAMILY ARM repeat 428 686 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01024 Aip-Chr10 13522469 13527499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01024 1 732 U-box Gene Family AT1G24330 65.258 0.0 972
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01024 - - adu:107478647 1281.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01024 10 13522469 13527499 Aip10g01024 10 13522469 13527499 ECH
Aip10g01024 10 13522469 13527499 Aip03g04951 03 134099606 134104407 PCT