Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00927 ATGAAGAAGGTTATGGTAACTATGATGATGGTGATGATGATGGTGTCTATAACCATGGCAGCACCTTCACCTTCACCTTCTCCTTCTTCTCCTTCAACATGCCCCATCGACTTTAGCTATGTAAAGAGAGTTCCATGGAACCCTTCAGCATGTGAGAATTTCCACTCTTTATCATCAAACTTGAGCAACTGTTGCACCTCGCTCTTATCTCTAATCGGAATAGGGTTCGCGCAGTACCTTAAAGCAACTACAAATTTCAACCTCCCAAACCTTGAAACCTCAACCTCATGCGTCCATGATTTCCAGTCTCAGCTCAATTCCTTATCTCTCCAAAACAACCTCGTTGACTTGTGCTTTGACCCTCACCAGTTCGTCATGTCCCGAAACGTCTGCGCAGGAATTGAAACCCTAAAAGATTGGGACAAGAAGCTTGGTCAAATCACGCCTCTTGATACTAGTTGCAAACAAGACCTCACTGATCTTTCGCTATGTGATGTGTGTCTTACTGCGGGGTTTCAGGTGCAGCATAAACTTGTCTCCATTGATGGTAATGCTTCTCACTCTGAAAATTGTTTCAAATTTACTATTCTATATGCTGCTGCGTTTGTGAATCAGTATGGACCTGAAAGCAATGGTGCCATGAGTTGCATCTTTGGTATGTCACTTTACACACAGGGTGGTGGTTCTGGTGGGAAAAGTCACCAGGGTTTGGTTTTTGGGTTAACTGGTGCTGGTGTTGCTTTGTTAGTTATGTCTTGTTTGTTAGGGGTTTATGTTTGGTATGATAGGAAGGTTAGGAGGAAGAAGCTTAATGATGATGAATTTGACTTTGATCCTGAGGAACAAGGGTCTAGGCGTAGGTTGAGGCCGAATACAGGGTCTATTTGGTTCAAGATTGATGAGCTTGAGAAGGCTACCGATAATTTCTCAACCAAGAATTTCATTGGCAGGGGTGGATTTGGGCTTGTTTTCAAGGGGGTTTTGTCCGATGGTTCCGTCGTGGCAGTTAAGAGGATCTTGGAATCTGATTTTCAAGGGGATGTGGAGTTTTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCACCGGAATCTGGTGCCTCTTCGAGGCTGTTGTGTAGTGGATGATGATGATGAAAAATTTAATGACAGGGGAAGCCAGAGGTTTTTGGTTTATGATTACATGCCGAATGGAAACCTTGAAGACCATCTGTTTCTGGTGAGTGAGCAGCAAAAGTTGAAGAAATCGCTGACTTGGCCTCAAAGGAAGAGCATAATCTTGGATGTGGCAAAGGGGCTGGCTTATCTTCACTATGGAGTCAAGCCTGCAATTTTTCATAGGGATATAAAAGCAACCAACATATTACTTGATGAAGACATGAGAGCCAGAGTTGCGGATTTCGGGCTTGCTAAACAAAGCAGGGAAGGCCAATCTCATCTCACTACAAGAGTAGCTGGAACTCATGGATATCTAGCTCCGGAATATGCTCTTTACGGTCAGCTTACAGAGAAAAGTGATGTGTATAGTTTTGGGGTTGTTGTTTTGGAGATAATGTGGAACATAGAAGAGGCATTGGATGCTTCTTTGTTGAAGGATGACAGCTTTGGAAGTTCAAATCCAAAGAGCATAATGGAAAGGTTTTTACTTGTGGGAATTCTATGCTCACATGTGATGGTTGCTCTGAGGCCAACAATTTCTGATGCATTGAAGATGCTGGAAGGTGATATTGAGGTTCCTCAAATCCCGGATCGGCCAATGCCGCTCGGACACCCTGCTACGTTTTACGGCGATGGCGGCAGTACTTTCAGCATATCTCCGGCCTTAAGCGGCCCCAAGTTGCAAACTGGAGACATGCTCAGGTCCATTGGTAAGAGCTGA 1878 0.4414 MKKVMVTMMMVMMMVSITMAAPSPSPSPSSPSTCPIDFSYVKRVPWNPSACENFHSLSSNLSNCCTSLLSLIGIGFAQYLKATTNFNLPNLETSTSCVHDFQSQLNSLSLQNNLVDLCFDPHQFVMSRNVCAGIETLKDWDKKLGQITPLDTSCKQDLTDLSLCDVCLTAGFQVQHKLVSIDGNASHSENCFKFTILYAAAFVNQYGPESNGAMSCIFGMSLYTQGGGSGGKSHQGLVFGLTGAGVALLVMSCLLGVYVWYDRKVRRKKLNDDEFDFDPEEQGSRRRLRPNTGSIWFKIDELEKATDNFSTKNFIGRGGFGLVFKGVLSDGSVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVVDDDDEKFNDRGSQRFLVYDYMPNGNLEDHLFLVSEQQKLKKSLTWPQRKSIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMWNIEEALDASLLKDDSFGSSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPATFYGDGGSTFSISPALSGPKLQTGDMLRSIGKS 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00927 625 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 535 619 - -
Aip10g00927 625 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Aip10g00927 625 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 518 - -
Aip10g00927 625 ProSiteProfiles Protein kinase domain profile. 309 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g00927 625 Gene3D Phosphorylase Kinase; domain 1 279 394 - -
Aip10g00927 625 Pfam SPARK 29 192 IPR043891 -
Aip10g00927 625 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 11 518 - -
Aip10g00927 625 SMART serkin_6 309 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g00927 625 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 535 619 - -
Aip10g00927 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Aip10g00927 625 SUPERFAMILY Protein kinase-like (PK-like) 289 581 IPR011009 -
Aip10g00927 625 Pfam Protein kinase domain 310 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g00927 625 Gene3D Transferase(Phosphotransferase) domain 1 395 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00927 Aip-Chr10 11177909 11180568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00927 30 620 Receptor kinase-like Gene Family AT1G11050 60.548 0.0 732
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Aip10g00927 Pkinase 5.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00927 - - gmx:100806560 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00927 10 11177909 11180568 Aip10g00927 10 11177909 11180568 ECH
Aip10g00927 10 11177909 11180568 Aip03g04470 03 129023364 129025195 PCT