Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00857 ATGGGATGGAAGAGATTGTGGGTGAAGCTTTTAGTTGAGGACAATTTAGGGTTGTTGCTGAATGACATTGAAGATTGTCCTGGGGCATTGGAGATGATAGTGCCTCATGCCTATGACTCAGCCTTTGCCTCTCTTCAATTCCAATATCCATGGCCTTTAGCCTTTGAAGGGTTTCCAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGACAGGATCAATGCACAGCTTGCAACTCTTAGAAAACTGATTCCTAAGTCTGATAAGATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGATCATGTGAAGGATCTAAAGCGAAAAGCGATGGATGTGAGCAAAAGCATCACAGTTCCAAGTGAAACTGATGAACATAGAACAGGCGAGCTCACAGAACCTCAGAAAATCAAAATCCAAAATCAAGAAGGCAGCATAGAGGAGACAGGAACAGAGTCTTACCAGCGAATGAGGAGGCAGGCTCGGCCGGTGGTGGTCGCGGCTGCTGTGGATGGTTGTGGGTGGCGAATGAGGAGGCGGGCTAGGTGA 573 0.4712 MGWKRLWVKLLVEDNLGLLLNDIEDCPGALEMIVPHAYDSAFASLQFQYPWPLAFEGFPEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMDVSKSITVPSETDEHRTGELTEPQKIKIQNQEGSIEETGTESYQRMRRQARPVVVAAAVDGCGWRMRRRAR 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00857 190 Gene3D - 60 123 IPR036638 GO:0046983
Aip10g00857 190 CDD bHLH_AtAIG1_like 60 133 - -
Aip10g00857 190 SMART finulus 71 120 IPR011598 GO:0046983
Aip10g00857 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 118 IPR036638 GO:0046983
Aip10g00857 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983
Aip10g00857 190 PANTHER TRANSCRIPTION FACTOR BHLH51 53 135 - -
Aip10g00857 190 Pfam Helix-loop-helix DNA-binding domain 68 114 IPR011598 GO:0046983
Aip10g00857 190 PANTHER TRANSCRIPTION FACTOR BHLH30 53 135 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00857 Aip-Chr10 10406079 10407880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00857 38 133 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 46.939 2.77e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip10g00857 HLH 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00857 - - adu:107459448 194.126